Dependency analysis on package MatrixGenerics

General information

Bioconductor link link
Package version1.8.0
Number of strong dependencies2
Number of all dependencies59
Number of parent packages2
Max heaviness from parent packages1
Total heaviness from parent packages2
Number of parent packages (including Suggests and Enhances)6

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of MatrixGenerics and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on MatrixGenerics.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils graphics stats grDevices grid stats4 tools MatrixGenerics Matrix matrixStats lattice Rcpp DelayedArray S4Vectors IRanges BiocGenerics sparseMatrixStats GenomicRanges Biobase GenomeInfoDb XVector RCurl GenomeInfoDbData zlibbioc bitops brio callr cli crayon desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr glue rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 0.5 1 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents matrixStats methods sparseMatrixStats DelayedMatrixStats SummarizedExperiment testthat In total 2 packages are required directly or indirectly (59) when installing 'MatrixGenerics' (1.8.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'MatrixGenerics' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of MatrixGenerics.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on MatrixGenerics: number of required packages that can be reduced if moving parent package to Suggests of MatrixGenerics.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on MatrixGenerics
matrixStats Depends 1 0 0 0 1
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of MatrixGenerics. 0 1
testthat Suggests No object is imported into the namespace of MatrixGenerics. 36 36
SummarizedExperiment Suggests No object is imported into the namespace of MatrixGenerics. 24 23
DelayedMatrixStats Suggests No object is imported into the namespace of MatrixGenerics. 17 16
sparseMatrixStats Suggests No object is imported into the namespace of MatrixGenerics. 11 10

Analysis was done with pkgndep.