Dependency analysis on package sparseMatrixStats

General information

Bioconductor link link
Package version1.8.0
Number of strong dependencies11
Number of all dependencies64
Number of parent packages5
Max heaviness from parent packages6
Total heaviness from parent packages8
Number of parent packages (including Suggests and Enhances)10
Max co-heaviness from parent packages ("matrixStats" and "MatrixGenerics")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of sparseMatrixStats and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on sparseMatrixStats.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats grDevices graphics grid tools matrixStats lattice magrittr glue evaluate rlang highr stringr yaml xfun stringi digest jsonlite R6 cli crayon ellipsis lifecycle fansi tibble pillar pkgconfig vctrs utf8 bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs rappdirs profmem bookdown rmarkdown BiocManager brio callr desc pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj rematch2 0 1 2 3 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents MatrixGenerics matrixStats methods Rcpp Matrix knitr bench rmarkdown BiocStyle testthat In total 11 packages are required directly or indirectly (64) when installing 'sparseMatrixStats' (1.8.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'sparseMatrixStats' Imported functions Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of sparseMatrixStats.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on sparseMatrixStats: number of required packages that can be reduced if moving parent package to Suggests of sparseMatrixStats.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on sparseMatrixStats
MatrixGenerics Depends The whole set of functions/methods/classes from parent package is imported to the namespace of sparseMatrixStats. 2 1
Matrix Imports 1 0 2 7 6
Rcpp Imports 1 0 0 2 1
matrixStats Imports 1 0 0 0 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of sparseMatrixStats. 0 0
testthat Suggests No object is imported into the namespace of sparseMatrixStats. 36 32
BiocStyle Suggests No object is imported into the namespace of sparseMatrixStats. 30 27
rmarkdown Suggests No object is imported into the namespace of sparseMatrixStats. 27 24
bench Suggests No object is imported into the namespace of sparseMatrixStats. 18 15
knitr Suggests No object is imported into the namespace of sparseMatrixStats. 12 10

Analysis was done with pkgndep.