Dependency analysis on package airway

General information

Bioconductor link link
Package version1.16.0
Number of strong dependencies25
Number of all dependencies72
Number of parent packages1
Max heaviness from parent packages25
Total heaviness from parent packages25
Number of parent packages (including Suggests and Enhances)4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of airway and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on airway.

Adjust heatmap size:
Base packages Other packages Depends Suggests utils stats tools methods graphics grDevices stats4 grid Biobase BiocGenerics MatrixGenerics GenomicRanges Matrix S4Vectors IRanges GenomeInfoDb DelayedArray matrixStats XVector lattice RCurl GenomeInfoDbData zlibbioc bitops xfun glue magrittr mime evaluate highr stringr yaml stringi readr xml2 dplyr data.table tidyr limma curl R.utils cli clipr crayon hms lifecycle R6 rlang tibble vroom cpp11 tzdb generics tidyselect vctrs pillar ellipsis purrr R.oo R.methodsS3 pkgconfig fansi bit64 withr progress utf8 bit prettyunits 0 0.5 1 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents SummarizedExperiment markdown knitr GEOquery In total 25 packages are required directly or indirectly (72) when installing 'airway' (1.16.0) Depends Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'airway' Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of airway.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on airway: number of required packages that can be reduced if moving parent package to Suggests of airway.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on airway
SummarizedExperiment Depends Parent package is listed in Depends of airway but no object from parent package is imported. 24 25
GEOquery Suggests No object is imported into the namespace of airway. 45 38
knitr Suggests No object is imported into the namespace of airway. 12 9
markdown Suggests No object is imported into the namespace of airway. 5 3

Analysis was done with pkgndep.