Dependency analysis on package biomformat

General information

Bioconductor link link
Package version1.24.0
Number of strong dependencies14
Number of all dependencies64
Number of parent packages5
Max heaviness from parent packages6
Total heaviness from parent packages12
Number of parent packages (including Suggests and Enhances)9
Max co-heaviness from parent packages ("Matrix" and "plyr")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of biomformat and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on biomformat.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats grDevices graphics grid tools Rcpp Rhdf5lib rhdf5filters lattice evaluate magrittr glue highr stringr yaml xfun stringi digest jsonlite R6 rlang knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs bookdown rmarkdown BiocManager brio callr cli crayon desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 2 4 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods jsonlite plyr rhdf5 Matrix knitr rmarkdown BiocStyle testthat In total 14 packages are required directly or indirectly (64) when installing 'biomformat' (1.24.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'biomformat' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of biomformat.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on biomformat: number of required packages that can be reduced if moving parent package to Suggests of biomformat.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on biomformat
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of biomformat. 0 0
Matrix Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomformat. 7 6
rhdf5 Imports 1 0 0 3 3
plyr Imports 5 0 0 3 2
jsonlite Imports 2 0 0 1 1
testthat Suggests No object is imported into the namespace of biomformat. 36 31
BiocStyle Suggests No object is imported into the namespace of biomformat. 30 26
rmarkdown Suggests No object is imported into the namespace of biomformat. 27 23
knitr Suggests No object is imported into the namespace of biomformat. 12 10

Analysis was done with pkgndep.