Dependency analysis on package rhdf5

General information

Bioconductor link link
Package version2.40.0
Number of strong dependencies3
Number of all dependencies83
Number of parent packages3
Max heaviness from parent packages1
Total heaviness from parent packages2
Number of parent packages (including Suggests and Enhances)12
Max co-heaviness from parent packages ("rhdf5filters" and "Rhdf5lib")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of rhdf5 and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on rhdf5.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests stats utils methods grDevices tools graphics grid splines Rhdf5lib glue magrittr rlang R6 evaluate digest cli crayon ellipsis lifecycle fansi tibble pillar pkgconfig vctrs utf8 jsonlite yaml xfun highr stringr stringi withr knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 bit generics tidyselect purrr bookdown rmarkdown BiocManager gtable isoband MASS mgcv scales nlme Matrix farver labeling munsell RColorBrewer viridisLite lattice colorspace testthat 0 0.5 1 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods Rhdf5lib rhdf5filters microbenchmark bit64 knitr dplyr rmarkdown BiocStyle testthat ggplot2 mockery In total 3 packages are required directly or indirectly (83) when installing 'rhdf5' (2.40.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'rhdf5' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of rhdf5.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on rhdf5: number of required packages that can be reduced if moving parent package to Suggests of rhdf5.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on rhdf5
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of rhdf5. 0 1
rhdf5filters Imports The whole set of functions/methods/classes from parent package is imported to the namespace of rhdf5. 1 1
Rhdf5lib Imports The whole set of functions/methods/classes from parent package is imported to the namespace of rhdf5. 0 0
ggplot2 Suggests No object is imported into the namespace of rhdf5. 37 37
mockery Suggests No object is imported into the namespace of rhdf5. 37 37
testthat Suggests No object is imported into the namespace of rhdf5. 36 36
BiocStyle Suggests No object is imported into the namespace of rhdf5. 30 30
rmarkdown Suggests No object is imported into the namespace of rhdf5. 27 27
dplyr Suggests No object is imported into the namespace of rhdf5. 20 20
knitr Suggests No object is imported into the namespace of rhdf5. 12 12
bit64 Suggests No object is imported into the namespace of rhdf5. 4 4
microbenchmark Suggests No object is imported into the namespace of rhdf5. 2 3

Analysis was done with pkgndep.