Dependency analysis on package biomod2

General information

CRAN link link
Package version3.5.1
Number of strong dependencies198
Number of all dependencies234
Number of parent packages31
Max heaviness from parent packages88
Total heaviness from parent packages128
Number of parent packages (including Suggests and Enhances)38
Max co-heaviness from parent packages ("ENMeval" and "caret")5

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of biomod2 and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on biomod2.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils stats methods grDevices graphics grid splines parallel tools stats4 tcltk lattice rlang magrittr Rcpp Matrix glue tibble lifecycle R6 ellipsis fansi pillar pkgconfig vctrs cli crayon utf8 codetools iterators MASS foreach sp survival RColorBrewer viridisLite digest withr nlme plyr terra generics purrr tidyselect gtable isoband mgcv scales farver labeling munsell colorspace raster dplyr cpp11 ggplot2 data.table stringr rpart stringi evaluate jsonlite rstudioapi backports class Formula glmnet shape RcppEigen latticeExtra png jpeg lubridate tidyr nnet brio callr desc pkgload praise processx ps waldo rprojroot diffobj rematch2 htmltools fastmap knitr base64enc viridis highr yaml xfun gridExtra plotmo TeachingDemos plotrix hexbin zoo e1071 ModelMetrics pROC recipes reshape2 proxy gower hardhat ipred timeDate prodlim KernSmooth lava future.apply progressr numDeriv SQUAREM future globals listenv parallelly dismo doSNOW doParallel maxnet testthat rangeModelMetadata snow rgbif rgdal rgeos shiny spatstat spocc spThin xml2 crul whisker oai lazyeval conditionz wk httpuv mime xtable fontawesome sourcetools later promises commonmark bslib cachem spatstat.data spatstat.geom spatstat.random spatstat.core spatstat.linnet spatstat.utils rbison rebird rvertnet ridigbio wellknown spam fields curl urltools httpcode httr uuid sass jquerylib deldir polyclip spatstat.sparse abind tensor goftest mapproj assertthat maps BH dotCall64 triebeard openssl fs rappdirs askpass sys pixmap cluster foreign htmlTable checkmate htmlwidgets ade4 gbm ape adehabitatHR adehabitatMA biomod2 ecodist maptools randomForest gtools PresenceAbsence classInt vegan poibin matrixStats ks nabor Hmisc adehabitatLT filehash reshape rasterVis mda caret ENMeval earth permute FNN kernlab mclust multicool mvtnorm plot3D pracma CircStats misc3d boot 0 10 20 30 Imported methods 0 100 200 Required packages 0 20 40 60 80 Heaviness from parents stats utils parallel methods PresenceAbsence randomForest rlang abind nnet checkmate rpart foreach purrr reshape pROC lattice MASS doParallel sp mda earth raster gbm dismo maxnet rasterVis dplyr tidyr ggplot2 caret ENMeval foreign gam ade4 mgcv testthat Hmisc ecospat In total 198 packages are required directly or indirectly (234) when installing 'biomod2' (3.5.1) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'biomod2' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of biomod2.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on biomod2: number of required packages that can be reduced if moving parent package to Suggests of biomod2.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on biomod2
ENMeval Imports 1 0 0 154 88
caret Imports 2 0 0 81 22
rasterVis Imports 1 0 0 19 6
earth Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 8 5
checkmate Imports 2 0 0 2 2
PresenceAbsence Imports 1 0 0 0 1
randomForest Imports 1 0 0 1 1
reshape Imports 2 0 0 4 1
mda Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 7 1
gbm Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 11 1
stats Imports 10 0 0 0 0
utils Imports 6 0 0 0 0
parallel Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 0 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 0 0
rlang Imports 1 0 0 1 0
abind Imports 2 0 0 2 0
nnet Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 2 0
rpart Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 3 0
foreach Imports 1 0 0 3 0
purrr Imports 1 0 0 3 0
pROC Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 4 0
lattice Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 5 0
MASS Imports 1 0 0 5 0
doParallel Imports Parent package is listed in Imports of biomod2 but no object from parent package is imported. 5 0
sp Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 7 0
raster Imports 38 0 0 10 0
dismo Imports 1 0 0 11 0
maxnet Imports 1 0 0 17 0
dplyr Imports 10 0 0 20 0
tidyr Imports 1 0 0 22 0
ggplot2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of biomod2. 37 0
ecospat Suggests No object is imported into the namespace of biomod2. 232 35
Hmisc Suggests No object is imported into the namespace of biomod2. 67 5
ade4 Suggests No object is imported into the namespace of biomod2. 10 2
foreign Suggests No object is imported into the namespace of biomod2. 3 1
gam Suggests No object is imported into the namespace of biomod2. 6 1
mgcv Suggests No object is imported into the namespace of biomod2. 10 0
testthat Suggests No object is imported into the namespace of biomod2. 36 0

Analysis was done with pkgndep.