Dependency analysis on package bluster

General information

Bioconductor link link
Package version1.6.0
Number of strong dependencies27
Number of all dependencies207
Number of parent packages10
Max heaviness from parent packages3
Total heaviness from parent packages6
Number of parent packages (including Suggests and Enhances)24
Max co-heaviness from parent packages ("BiocNeighbors" and "BiocParallel")9

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of bluster and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on bluster.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils methods stats grDevices graphics grid stats4 parallel tools splines compiler lattice magrittr Matrix Rcpp BiocGenerics pkgconfig futile.logger snow codetools BH lambda.r futile.options formatR S4Vectors BiocParallel RcppHNSW glue rlang R6 digest lifecycle jsonlite cli crayon ellipsis withr fansi tibble pillar vctrs utf8 SingleCellExperiment GenomicRanges SummarizedExperiment DelayedArray IRanges GenomeInfoDb XVector MatrixGenerics Biobase RCurl GenomeInfoDbData zlibbioc matrixStats bitops evaluate stringr yaml stringi RColorBrewer gtable scales viridisLite farver labeling munsell colorspace beachmat highr xfun bslib htmltools jquerylib sass base64enc fastmap fs rappdirs DelayedMatrixStats sparseMatrixStats ggplot2 isoband MASS mgcv nlme knitr tinytex BiocManager gridExtra scuttle BiocNeighbors BiocSingular ScaledMatrix irlba rsvd curl httr dplyr mime openssl generics tidyselect purrr askpass sys bookdown rmarkdown brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 edgeR limma igraph statmod bluster metapod dqrng locfit cluster sitmo ggbeeswarm viridis Rtsne RcppML ggrepel beeswarm vipor RcppEigen ClusterR benchmarkme RcppArmadillo Rhdf5lib gtools gmp benchmarkmeData doParallel foreach iterators ExperimentHub AnnotationHub AnnotationDbi ensembldb GenomicFeatures BiocFileCache RSQLite BiocVersion interactiveDisplayBase DBI KEGGREST AnnotationFilter rtracklayer Rsamtools ProtGenerics Biostrings BiocIO biomaRt dbplyr filelock bit64 blob memoise plogr shiny DT png lazyeval XML GenomicAlignments restfulr Rhtslib progress xml2 assertthat bit cachem httpuv xtable fontawesome sourcetools later promises commonmark htmlwidgets crosstalk rjson hms prettyunits 0 5 10 Imported methods 0 50 100 Required packages 0 50 100 Heaviness from parents stats methods utils Rcpp cluster S4Vectors Matrix igraph BiocParallel BiocNeighbors dynamicTreeCut kohonen apcluster knitr pheatmap rmarkdown BiocStyle testthat scuttle viridis scran scater mbkmeans scRNAseq In total 27 packages are required directly or indirectly (207) when installing 'bluster' (1.6.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'bluster' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of bluster.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on bluster: number of required packages that can be reduced if moving parent package to Suggests of bluster.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on bluster
igraph Imports 10 0 0 10 3
BiocNeighbors Imports 5 0 0 22 2
cluster Imports 4 0 0 4 1
stats Imports 8 0 0 0 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of bluster. 0 0
utils Imports 3 0 0 0 0
Rcpp Imports 1 0 0 2 0
S4Vectors Imports 6 0 0 6 0
Matrix Imports 2 0 0 7 0
BiocParallel Imports 5 0 0 11 0
scRNAseq Suggests No object is imported into the namespace of bluster. 124 102
mbkmeans Suggests No object is imported into the namespace of bluster. 89 67
scater Suggests No object is imported into the namespace of bluster. 85 61
scran Suggests No object is imported into the namespace of bluster. 58 32
testthat Suggests No object is imported into the namespace of bluster. 36 30
viridis Suggests No object is imported into the namespace of bluster. 39 30
BiocStyle Suggests No object is imported into the namespace of bluster. 30 26
rmarkdown Suggests No object is imported into the namespace of bluster. 27 23
scuttle Suggests No object is imported into the namespace of bluster. 39 19
pheatmap Suggests No object is imported into the namespace of bluster. 18 13
knitr Suggests No object is imported into the namespace of bluster. 12 9
dynamicTreeCut Suggests No object is imported into the namespace of bluster. 1 1
kohonen Suggests No object is imported into the namespace of bluster. 3 1
apcluster Suggests No object is imported into the namespace of bluster. 9 1

Analysis was done with pkgndep.