Dependency analysis on package DirichletMultinomial

General information

Bioconductor link link
Package version1.38.0
Number of strong dependencies8
Number of all dependencies15
Number of parent packages5
Max heaviness from parent packages1
Total heaviness from parent packages1
Number of parent packages (including Suggests and Enhances)10
Max co-heaviness from parent packages ("IRanges" and "S4Vectors")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of DirichletMultinomial and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on DirichletMultinomial.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests utils stats graphics methods stats4 grDevices grid BiocGenerics S4Vectors 0 2 4 Imported methods 0 2 4 6 Required packages 0 1 2 3 Heaviness from parents S4Vectors IRanges stats4 methods BiocGenerics parallel RColorBrewer xtable lattice MASS In total 8 packages are required directly or indirectly (15) when installing 'DirichletMultinomial' (1.38.0) Depends Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'DirichletMultinomial' Imported functions Imported S4 methods Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of DirichletMultinomial.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on DirichletMultinomial: number of required packages that can be reduced if moving parent package to Suggests of DirichletMultinomial.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on DirichletMultinomial
IRanges Depends 0 3 0 7 1
S4Vectors Depends 0 0 4 6 0
stats4 Imports 3 0 0 0 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of DirichletMultinomial. 0 0
BiocGenerics Imports 0 2 0 4 0
lattice Suggests No object is imported into the namespace of DirichletMultinomial. 5 3
MASS Suggests No object is imported into the namespace of DirichletMultinomial. 5 2
parallel Suggests No object is imported into the namespace of DirichletMultinomial. 0 1
RColorBrewer Suggests No object is imported into the namespace of DirichletMultinomial. 0 1
xtable Suggests No object is imported into the namespace of DirichletMultinomial. 2 1

Analysis was done with pkgndep.