Dependency analysis on package Fletcher2013b

General information

Bioconductor link link
Package version1.32.0
Number of strong dependencies131
Number of all dependencies131
Number of parent packages5
Max heaviness from parent packages104
Total heaviness from parent packages113
Number of parent packages (including Suggests and Enhances)5
Max co-heaviness from parent packages ("RTN" and "Fletcher2013a")5

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of Fletcher2013b and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on Fletcher2013b.

Adjust heatmap size:
Base packages Other packages Depends Imports grid grDevices graphics stats utils methods parallel stats4 tools splines magrittr Matrix pkgconfig lattice igraph limma Biobase BiocGenerics KernSmooth bitops VennDiagram gplots futile.logger gtools caTools lambda.r futile.options formatR RedeR minet viper mixtools snow data.table IRanges S4Vectors SummarizedExperiment car pwr pheatmap infotheo e1071 kernlab MASS segmented survival MatrixGenerics GenomicRanges GenomeInfoDb DelayedArray carData abind mgcv nnet pbkrtest quantreg maptools lme4 nlme RColorBrewer scales gtable class proxy matrixStats XVector RCurl GenomeInfoDbData broom dplyr numDeriv knitr SparseM MatrixModels sp foreign boot minqa nloptr Rcpp RcppEigen farver labeling lifecycle munsell R6 rlang viridisLite zlibbioc backports ellipsis generics glue purrr stringr tibble tidyr ggplot2 tidyselect vctrs pillar evaluate highr yaml xfun testthat colorspace stringi fansi cpp11 digest isoband withr cli crayon utf8 brio callr desc jsonlite pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 0 0.5 1 Imported methods 0 50 100 Required packages 0 50 100 Heaviness from parents igraph RedeR Fletcher2013a RTN RColorBrewer In total 131 packages are required directly or indirectly (131) when installing 'Fletcher2013b' (1.32.0) Depends Imports Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'Fletcher2013b' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of Fletcher2013b.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on Fletcher2013b: number of required packages that can be reduced if moving parent package to Suggests of Fletcher2013b.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on Fletcher2013b
RTN Depends The whole set of functions/methods/classes from parent package is imported to the namespace of Fletcher2013b. 121 104
Fletcher2013a Depends The whole set of functions/methods/classes from parent package is imported to the namespace of Fletcher2013b. 19 9
igraph Depends The whole set of functions/methods/classes from parent package is imported to the namespace of Fletcher2013b. 10 0
RedeR Depends The whole set of functions/methods/classes from parent package is imported to the namespace of Fletcher2013b. 11 0
RColorBrewer Imports 1 0 0 0 0

Analysis was done with pkgndep.