Dependency analysis on package flowViz

General information

Bioconductor link link
Package version1.60.0
Number of strong dependencies28
Number of all dependencies142
Number of parent packages16
Max heaviness from parent packages10
Total heaviness from parent packages17
Number of parent packages (including Suggests and Enhances)22
Max co-heaviness from parent packages ("Biobase" and "flowCore")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of flowViz and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on flowViz.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests stats utils grDevices graphics methods grid stats4 tools splines tcltk lattice BiocGenerics Biobase Rcpp matrixStats cytolib S4Vectors RcppArmadillo BH RProtoBufLib RcppParallel Rhdf5lib png jpeg RColorBrewer glue magrittr xfun evaluate digest rlang R6 jsonlite mime highr stringr yaml stringi base64enc tibble withr lifecycle vctrs pillar ellipsis fansi pkgconfig cli crayon utf8 bslib htmltools jquerylib knitr tinytex sass fastmap fs rappdirs brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 MASS flowCore flowWorkspace ncdfFlow flowViz fda cluster KernSmooth ks rrcov corpcor mnormt latticeExtra XML ggplot2 graph RBGL Rgraphviz data.table dplyr scales aws.s3 aws.signature DelayedArray zlibbioc hexbin IDPmisc fds deSolve FNN kernlab Matrix mclust mgcv multicool mvtnorm plot3D pracma robustbase pcaPP gtable isoband generics tidyselect farver labeling munsell viridisLite curl httr xml2 MatrixGenerics IRanges rainbow RCurl nlme misc3d DEoptimR purrr colorspace openssl hdrcde bitops askpass locfit ash sys 0 5 10 Imported methods 0 50 100 Required packages 0 20 40 60 80 Heaviness from parents lattice flowCore stats4 graphics grDevices grid methods RColorBrewer stats utils KernSmooth Biobase MASS hexbin IDPmisc latticeExtra colorspace markdown knitr rmarkdown testthat flowStats In total 28 packages are required directly or indirectly (142) when installing 'flowViz' (1.60.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'flowViz' Imported functions Imported S4 methods Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of flowViz.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on flowViz: number of required packages that can be reduced if moving parent package to Suggests of flowViz.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on flowViz
flowCore Depends The whole set of functions/methods/classes from parent package is imported to the namespace of flowViz. 17 10
lattice Depends The whole set of functions/methods/classes from parent package is imported to the namespace of flowViz. 5 0
latticeExtra Imports 3 0 0 9 3
KernSmooth Imports 2 0 0 1 1
MASS Imports 1 0 0 5 1
hexbin Imports 2 0 0 7 1
IDPmisc Imports 2 0 0 7 1
stats4 Imports 1 0 0 0 0
graphics Imports 13 0 0 0 0
grDevices Imports 4 0 0 0 0
grid Imports 7 0 0 0 0
methods Imports 2 0 6 0 0
RColorBrewer Imports 1 0 0 0 0
stats Imports 9 0 0 0 0
utils Imports 1 0 0 0 0
Biobase Imports 0 6 0 5 0
flowStats Suggests No object is imported into the namespace of flowViz. 111 84
testthat Suggests No object is imported into the namespace of flowViz. 36 32
rmarkdown Suggests No object is imported into the namespace of flowViz. 27 24
knitr Suggests No object is imported into the namespace of flowViz. 12 10
markdown Suggests No object is imported into the namespace of flowViz. 5 4
colorspace Suggests No object is imported into the namespace of flowViz. 4 1

Analysis was done with pkgndep.