Dependency analysis on package flowCore

General information

Bioconductor link link
Package version2.8.0
Number of strong dependencies17
Number of all dependencies144
Number of parent packages15
Max heaviness from parent packages3
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)25
Max co-heaviness from parent packages ("S4Vectors" and "stats4")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of flowCore and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on flowCore.

Adjust heatmap size:
Base packages Other packages Imports LinkingTo Suggests utils methods stats graphics stats4 grDevices grid tools splines tcltk parallel BiocGenerics Rcpp RcppParallel RProtoBufLib BH Rhdf5lib RcppArmadillo glue magrittr gtable graph flowCore lattice Biobase latticeExtra MASS RColorBrewer matrixStats cytolib S4Vectors png jpeg digest rlang tibble withr lifecycle R6 vctrs pillar ellipsis fansi pkgconfig cli crayon utf8 jsonlite hexbin ncdfFlow XML ggplot2 RBGL Rgraphviz data.table dplyr scales aws.s3 aws.signature DelayedArray zlibbioc Matrix mgcv isoband generics tidyselect farver labeling munsell viridisLite curl httr xml2 base64enc MatrixGenerics IRanges nlme purrr colorspace mime openssl askpass sys KernSmooth IDPmisc flowWorkspace evaluate plyr flowViz fda cluster ks rrcov corpcor mnormt fds deSolve FNN kernlab mclust multicool mvtnorm plot3D pracma robustbase pcaPP rainbow RCurl misc3d DEoptimR hdrcde bitops locfit ash highr stringr yaml xfun stringi brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 gridExtra gtools flowStats flowClust clue R.utils R.oo R.methodsS3 0 5 10 15 Imported methods 0 50 100 Required packages 0 50 100 Heaviness from parents grDevices graphics methods stats utils stats4 matrixStats Rcpp BiocGenerics Biobase S4Vectors cytolib BH RProtoBufLib RcppArmadillo flowWorkspaceData gridExtra Rgraphviz knitr flowViz testthat flowWorkspace ggcyto flowStats openCyto In total 17 packages are required directly or indirectly (144) when installing 'flowCore' (2.8.0) Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'flowCore' Imported functions Imported S4 methods Imported S4 classes The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of flowCore.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on flowCore: number of required packages that can be reduced if moving parent package to Suggests of flowCore.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on flowCore
cytolib Imports 1 0 0 9 3
grDevices Imports 1 0 0 0 1
matrixStats Imports 2 0 0 0 1
Biobase Imports 2 15 1 5 1
S4Vectors Imports 2 0 0 6 1
graphics Imports 3 0 0 0 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowCore. 0 0
stats Imports 11 0 0 0 0
utils Imports 6 0 0 0 0
stats4 Imports 2 0 0 0 0
Rcpp Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowCore. 2 0
BiocGenerics Imports 8 0 0 4 0
BH LinkingTo Parent package is listed in LinkingTo of flowCore but no object from parent package is imported. 0 0
RProtoBufLib LinkingTo Parent package is listed in LinkingTo of flowCore but no object from parent package is imported. 0 0
RcppArmadillo LinkingTo Parent package is listed in LinkingTo of flowCore but no object from parent package is imported. 4 0
openCyto Suggests No object is imported into the namespace of flowCore. 120 104
flowStats Suggests No object is imported into the namespace of flowCore. 111 95
ggcyto Suggests No object is imported into the namespace of flowCore. 84 68
flowWorkspace Suggests No object is imported into the namespace of flowCore. 80 64
testthat Suggests No object is imported into the namespace of flowCore. 36 32
flowViz Suggests No object is imported into the namespace of flowCore. 28 12
knitr Suggests No object is imported into the namespace of flowCore. 12 10
gridExtra Suggests No object is imported into the namespace of flowCore. 5 3
Rgraphviz Suggests No object is imported into the namespace of flowCore. 9 3
flowWorkspaceData Suggests No object is imported into the namespace of flowCore. 0 1

Analysis was done with pkgndep.