Dependency analysis on package flowWorkspace

General information

Bioconductor link link
Package version4.8.0
Number of strong dependencies80
Number of all dependencies155
Number of parent packages34
Max heaviness from parent packages9
Total heaviness from parent packages33
Number of parent packages (including Suggests and Enhances)42
Max co-heaviness from parent packages ("ggplot2" and "dplyr")10

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of flowWorkspace and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on flowWorkspace.

Adjust heatmap size:
Base packages Other packages Imports LinkingTo Suggests utils methods stats graphics grDevices stats4 grid tools splines parallel tcltk BiocGenerics glue R6 digest rlang magrittr BH Rcpp lifecycle base64enc RcppParallel RProtoBufLib Rhdf5lib RcppArmadillo lattice RColorBrewer matrixStats S4Vectors jsonlite tibble ellipsis fansi pillar pkgconfig vctrs cli crayon utf8 graph Matrix farver labeling munsell viridisLite colorspace Biobase cytolib withr png jpeg MatrixGenerics IRanges curl httr xml2 aws.signature mime openssl askpass sys flowCore zlibbioc generics tidyselect purrr gtable isoband MASS mgcv scales nlme evaluate yaml ggplot2 ncdfFlow flowWorkspace plyr hexbin data.table latticeExtra XML RBGL Rgraphviz dplyr aws.s3 DelayedArray highr stringr xfun stringi gridExtra corpcor gtools flowViz flowStats flowClust clue ks rrcov R.utils KernSmooth IDPmisc fda cluster mnormt FNN kernlab mclust multicool mvtnorm plot3D pracma robustbase pcaPP R.oo R.methodsS3 fds deSolve misc3d DEoptimR rainbow RCurl hdrcde bitops locfit ash bslib htmltools jquerylib knitr tinytex sass fastmap fs rappdirs brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 openCyto ggcyto RUnit 0 5 10 15 Imported methods 0 50 100 Required packages 0 20 40 Heaviness from parents graphics grDevices methods stats stats4 utils tools matrixStats RcppParallel RProtoBufLib data.table digest XML Rcpp aws.signature BiocGenerics Biobase lattice graph S4Vectors RBGL cytolib latticeExtra Rgraphviz DelayedArray scales aws.s3 flowCore ncdfFlow dplyr ggplot2 BH Rhdf5lib RcppArmadillo flowWorkspaceData parallel knitr rmarkdown testthat ggcyto openCyto CytoML In total 80 packages are required directly or indirectly (155) when installing 'flowWorkspace' (4.8.0) Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'flowWorkspace' Imported functions Imported S4 methods Imported S4 classes The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of flowWorkspace.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on flowWorkspace: number of required packages that can be reduced if moving parent package to Suggests of flowWorkspace.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on flowWorkspace
aws.s3 Imports 5 0 0 15 9
ggplot2 Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 37 8
dplyr Imports 6 0 0 20 4
latticeExtra Imports 1 0 0 9 3
DelayedArray Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 14 3
ncdfFlow Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowWorkspace. 19 2
data.table Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowWorkspace. 1 1
XML Imports 0 0 1 2 1
RBGL Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 8 1
Rgraphviz Imports 1 6 0 9 1
graphics Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 0 0
grDevices Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 0 0
methods Imports 0 2 10 0 0
stats Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 0 0
stats4 Imports 1 0 0 0 0
utils Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 0 0
tools Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 0 0
matrixStats Imports 1 0 0 0 0
RcppParallel Imports 1 0 0 0 0
RProtoBufLib Imports Parent package is listed in Imports of flowWorkspace but no object from parent package is imported. 0 0
digest Imports 1 0 0 1 0
Rcpp Imports 1 0 0 2 0
aws.signature Imports 1 0 0 3 0
BiocGenerics Imports 3 0 0 4 0
Biobase Imports 7 1 0 5 0
lattice Imports 1 0 0 5 0
graph Imports 4 13 1 6 0
S4Vectors Imports 1 0 0 6 0
cytolib Imports 1 0 0 9 0
scales Imports 2 0 0 15 0
flowCore Imports 2 0 2 17 0
BH LinkingTo Parent package is listed in LinkingTo of flowWorkspace but no object from parent package is imported. 0 0
Rhdf5lib LinkingTo Parent package is listed in LinkingTo of flowWorkspace but no object from parent package is imported. 0 0
RcppArmadillo LinkingTo Parent package is listed in LinkingTo of flowWorkspace but no object from parent package is imported. 4 0
CytoML Suggests No object is imported into the namespace of flowWorkspace. 125 46
openCyto Suggests No object is imported into the namespace of flowWorkspace. 120 41
rmarkdown Suggests No object is imported into the namespace of flowWorkspace. 27 16
testthat Suggests No object is imported into the namespace of flowWorkspace. 36 14
knitr Suggests No object is imported into the namespace of flowWorkspace. 12 7
ggcyto Suggests No object is imported into the namespace of flowWorkspace. 84 5
flowWorkspaceData Suggests No object is imported into the namespace of flowWorkspace. 0 1
parallel Suggests No object is imported into the namespace of flowWorkspace. 0 1

Analysis was done with pkgndep.