Dependency analysis on package IHW

General information

Bioconductor link link
Package version1.24.0
Number of strong dependencies9
Number of all dependencies157
Number of parent packages5
Max heaviness from parent packages2
Total heaviness from parent packages6
Number of parent packages (including Suggests and Enhances)17
Max co-heaviness from parent packages ("BiocGenerics" and "methods")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of IHW and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on IHW.

Adjust heatmap size:
Base packages Other packages Imports Suggests stats utils grDevices methods graphics tools grid stats4 splines parallel glue magrittr rlang R6 lifecycle digest evaluate tibble ellipsis fansi pillar pkgconfig vctrs cli crayon utf8 jsonlite lattice yaml xfun highr stringr stringi fastmap withr gtable farver labeling munsell RColorBrewer viridisLite colorspace Matrix knitr fs rappdirs purrr S4Vectors IRanges GenomicRanges SummarizedExperiment BiocGenerics Biobase GenomeInfoDb XVector MatrixGenerics DelayedArray RCurl GenomeInfoDbData zlibbioc matrixStats bitops htmltools jquerylib tinytex bslib base64enc sass brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 isoband MASS mgcv scales nlme httr memoise curl mime openssl cachem askpass sys generics tidyselect bookdown rmarkdown BiocManager usethis pkgbuild rcmdcheck remotes roxygen2 rversions sessioninfo testthat clipr gert gh whisker prettyunits xopen brew commonmark xml2 cpp11 credentials zip gitcreds ini BiocParallel genefilter locfit geneplotter ggplot2 Rcpp RcppArmadillo futile.logger snow codetools BH AnnotationDbi annotate survival lambda.r futile.options DBI RSQLite KEGGREST XML xtable formatR bit64 blob plogr png Biostrings bit 0 1 2 Imported methods 0 20 40 60 80 Required packages 0 20 40 60 80 Heaviness from parents methods lpsymphony slam fdrtool BiocGenerics gridExtra Matrix knitr scales dplyr airway rmarkdown BiocStyle testthat ggplot2 devtools DESeq2 In total 9 packages are required directly or indirectly (157) when installing 'IHW' (1.24.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'IHW' Imported functions


Dependency table

"Import" information is from the NAMESPACE file of IHW.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on IHW: number of required packages that can be reduced if moving parent package to Suggests of IHW.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on IHW
fdrtool Imports 1 0 0 3 2
BiocGenerics Imports 1 0 0 4 2
lpsymphony Imports 1 0 0 0 1
slam Imports 2 0 0 1 1
methods Imports 1 0 0 0 0
DESeq2 Suggests No object is imported into the namespace of IHW. 93 88
devtools Suggests No object is imported into the namespace of IHW. 76 72
ggplot2 Suggests No object is imported into the namespace of IHW. 37 33
testthat Suggests No object is imported into the namespace of IHW. 36 32
BiocStyle Suggests No object is imported into the namespace of IHW. 30 27
rmarkdown Suggests No object is imported into the namespace of IHW. 27 24
airway Suggests No object is imported into the namespace of IHW. 25 20
dplyr Suggests No object is imported into the namespace of IHW. 20 18
scales Suggests No object is imported into the namespace of IHW. 15 11
knitr Suggests No object is imported into the namespace of IHW. 12 10
gridExtra Suggests No object is imported into the namespace of IHW. 5 3
Matrix Suggests No object is imported into the namespace of IHW. 7 3

Analysis was done with pkgndep.