Dependency analysis on package MCMCglmm

General information

CRAN link link
Package version2.33
Number of strong dependencies17
Number of all dependencies39
Number of parent packages7
Max heaviness from parent packages4
Total heaviness from parent packages9
Number of parent packages (including Suggests and Enhances)11
Max co-heaviness from parent packages ("cubature" and "ape")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of MCMCglmm and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on MCMCglmm.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests stats graphics utils methods grDevices grid tools parallel lattice Rcpp nlme polynom htmlwidgets htmltools knitr jsonlite magrittr R6 yaml digest base64enc rlang fastmap evaluate highr stringr xfun glue stringi 0 0.5 1 Imported methods 0 10 20 Required packages 0 5 10 15 Heaviness from parents coda Matrix ape methods corpcor tensorA cubature combinat mvtnorm orthopolynom rgl In total 17 packages are required directly or indirectly (39) when installing 'MCMCglmm' (2.33) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'MCMCglmm' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of MCMCglmm.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on MCMCglmm: number of required packages that can be reduced if moving parent package to Suggests of MCMCglmm.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on MCMCglmm
ape Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MCMCglmm. 11 4
coda Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MCMCglmm. 6 1
Matrix Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MCMCglmm. 7 1
corpcor Imports 1 0 0 1 1
tensorA Imports 1 0 0 1 1
cubature Imports 1 0 0 3 1
methods Imports 1 0 0 0 0
rgl Suggests No object is imported into the namespace of MCMCglmm. 23 18
orthopolynom Suggests No object is imported into the namespace of MCMCglmm. 3 2
combinat Suggests No object is imported into the namespace of MCMCglmm. 0 1
mvtnorm Suggests No object is imported into the namespace of MCMCglmm. 2 1

Analysis was done with pkgndep.