Dependency analysis on package MethylAidData

General information

Bioconductor link link
Package version1.28.0
Number of strong dependencies168
Number of all dependencies183
Number of parent packages1
Max heaviness from parent packages168
Total heaviness from parent packages168
Number of parent packages (including Suggests and Enhances)6

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of MethylAidData and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on MethylAidData.

Adjust heatmap size:
Base packages Other packages Depends Suggests methods stats utils tools grDevices parallel grid graphics splines stats4 glue magrittr stringr yaml stringi futile.logger snow codetools BH digest rlang jsonlite R6 fastmap lambda.r futile.options formatR rappdirs Biobase BiocParallel BiocGenerics matrixStats minfi RColorBrewer SummarizedExperiment MASS tibble withr lattice GenomicRanges Biostrings bumphunter S4Vectors GenomeInfoDb IRanges beanplot nor1mix siggenes limma preprocessCore illuminaio DelayedMatrixStats mclust genefilter nlme reshape quadprog data.table GEOquery DelayedArray HDF5Array mime xtable crayon cachem ellipsis lifecycle MatrixGenerics Matrix fansi pillar pkgconfig vctrs XVector foreach iterators locfit doRNG GenomicFeatures AnnotationDbi RCurl GenomeInfoDbData multtest scrime base64 sparseMatrixStats annotate survival plyr readr xml2 dplyr tidyr curl R.utils rhdf5 rhdf5filters Rhdf5lib Rcpp cli utf8 zlibbioc rngtools DBI RSQLite BiocIO rtracklayer biomaRt KEGGREST bitops openssl XML httr clipr hms vroom cpp11 tzdb generics tidyselect purrr R.oo R.methodsS3 bit64 blob memoise plogr Rsamtools GenomicAlignments restfulr progress BiocFileCache png askpass bit Rhtslib rjson prettyunits dbplyr filelock sys assertthat htmltools bslib base64enc sass jquerylib fs ggplot2 gridBase hexbin shiny gtable isoband mgcv scales httpuv fontawesome sourcetools later promises commonmark farver labeling munsell viridisLite colorspace xfun evaluate highr bookdown knitr rmarkdown BiocManager tinytex IlluminaHumanMethylation450kmanifest IlluminaHumanMethylation450kanno.ilmn12.hg19 IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilm10b2.hg19 0 0.5 1 Imported methods 0 50 100 150 Required packages 0 50 100 150 Heaviness from parents MethylAid BiocParallel knitr BiocStyle minfiData minfiDataEPIC In total 168 packages are required directly or indirectly (183) when installing 'MethylAidData' (1.28.0) Depends Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'MethylAidData' Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of MethylAidData.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on MethylAidData: number of required packages that can be reduced if moving parent package to Suggests of MethylAidData.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on MethylAidData
MethylAid Depends Parent package is listed in Depends of MethylAidData but no object from parent package is imported. 167 168
BiocStyle Suggests No object is imported into the namespace of MethylAidData. 30 9
knitr Suggests No object is imported into the namespace of MethylAidData. 12 4
minfiData Suggests No object is imported into the namespace of MethylAidData. 144 3
minfiDataEPIC Suggests No object is imported into the namespace of MethylAidData. 144 3
BiocParallel Suggests No object is imported into the namespace of MethylAidData. 11 0

Analysis was done with pkgndep.