Dependency analysis on package MsCoreUtils

General information

Bioconductor link link
Package version1.8.0
Number of strong dependencies12
Number of all dependencies101
Number of parent packages6
Max heaviness from parent packages3
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)18
Max co-heaviness from parent packages ("clue" and "MASS")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of MsCoreUtils and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on MsCoreUtils.

Adjust heatmap size:
Base packages Other packages Imports LinkingTo Suggests stats methods utils grDevices graphics stats4 tools grid splines BiocGenerics cluster magrittr glue evaluate digest R6 rlang highr stringr yaml xfun stringi lattice Biobase MASS jsonlite knitr cli crayon withr Rcpp Matrix htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs BiocManager desc pkgload rprojroot rstudioapi ellipsis lifecycle fansi tibble pillar pkgconfig vctrs utf8 tmvtnorm norm pcaMethods impute mvtnorm gmm sandwich zoo bookdown rmarkdown brew commonmark purrr xml2 cpp11 brio callr praise processx ps waldo diffobj rematch2 affy limma ggplot2 affyio preprocessCore zlibbioc gtable isoband mgcv scales nlme farver labeling munsell RColorBrewer viridisLite colorspace 0 2 4 6 8 Imported methods 0 20 40 Required packages 0 10 20 30 40 Heaviness from parents methods stats MASS S4Vectors clue Rcpp impute norm preprocessCore Matrix pcaMethods knitr imputeLCMD rmarkdown BiocStyle roxygen2 testthat vsn In total 12 packages are required directly or indirectly (101) when installing 'MsCoreUtils' (1.8.0) Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'MsCoreUtils' Imported functions Imported S4 methods Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of MsCoreUtils.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on MsCoreUtils: number of required packages that can be reduced if moving parent package to Suggests of MsCoreUtils.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on MsCoreUtils
S4Vectors Imports 0 4 0 6 3
clue Imports 1 0 0 6 2
MASS Imports 1 0 0 5 1
methods Imports 2 0 0 0 0
stats Imports 8 0 0 0 0
Rcpp LinkingTo Parent package is listed in LinkingTo of MsCoreUtils but no object from parent package is imported. 2 1
vsn Suggests No object is imported into the namespace of MsCoreUtils. 46 40
testthat Suggests No object is imported into the namespace of MsCoreUtils. 36 32
BiocStyle Suggests No object is imported into the namespace of MsCoreUtils. 30 27
roxygen2 Suggests No object is imported into the namespace of MsCoreUtils. 30 26
rmarkdown Suggests No object is imported into the namespace of MsCoreUtils. 27 24
imputeLCMD Suggests No object is imported into the namespace of MsCoreUtils. 21 13
knitr Suggests No object is imported into the namespace of MsCoreUtils. 12 10
Matrix Suggests No object is imported into the namespace of MsCoreUtils. 7 3
pcaMethods Suggests No object is imported into the namespace of MsCoreUtils. 9 2
impute Suggests No object is imported into the namespace of MsCoreUtils. 0 1
norm Suggests No object is imported into the namespace of MsCoreUtils. 1 1
preprocessCore Suggests No object is imported into the namespace of MsCoreUtils. 1 1

Analysis was done with pkgndep.