Dependency analysis on package vsn

General information

Bioconductor link link
Package version3.64.0
Number of strong dependencies46
Number of all dependencies113
Number of parent packages6
Max heaviness from parent packages31
Total heaviness from parent packages37
Number of parent packages (including Suggests and Enhances)13
Max co-heaviness from parent packages ("affy" and "Biobase")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of vsn and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on vsn.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests utils methods stats grDevices graphics grid splines tools stats4 glue rlang R6 magrittr BiocGenerics digest pkgconfig vctrs cli crayon Biobase BiocManager zlibbioc tibble lifecycle ellipsis fansi pillar utf8 affyio preprocessCore withr gtable isoband MASS mgcv scales nlme Matrix farver labeling munsell RColorBrewer viridisLite lattice colorspace evaluate jsonlite yaml xfun highr stringr stringi fastmap knitr htmltools jquerylib tinytex bslib base64enc sass fs rappdirs affy generics tidyselect purrr bookdown rmarkdown brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 AnnotationDbi IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise Rcpp plogr httr png Biostrings bit cachem curl mime openssl XVector GenomeInfoDb askpass RCurl GenomeInfoDbData sys bitops 0 2 4 6 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents methods Biobase limma lattice affy ggplot2 affydata knitr dplyr rmarkdown BiocStyle testthat hgu95av2cdf In total 46 packages are required directly or indirectly (113) when installing 'vsn' (3.64.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'vsn' Imported functions Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of vsn.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on vsn: number of required packages that can be reduced if moving parent package to Suggests of vsn.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on vsn
methods Depends 7 0 0 0 0
Biobase Depends The whole set of functions/methods/classes from parent package is imported to the namespace of vsn. 5 0
ggplot2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of vsn. 37 31
affy Imports 6 0 1 11 5
limma Imports 0 0 1 5 1
lattice Imports 1 0 0 5 0
hgu95av2cdf Suggests No object is imported into the namespace of vsn. 45 31
BiocStyle Suggests No object is imported into the namespace of vsn. 30 21
rmarkdown Suggests No object is imported into the namespace of vsn. 27 19
testthat Suggests No object is imported into the namespace of vsn. 36 16
knitr Suggests No object is imported into the namespace of vsn. 12 8
dplyr Suggests No object is imported into the namespace of vsn. 20 4
affydata Suggests No object is imported into the namespace of vsn. 12 1

Analysis was done with pkgndep.