Dependency analysis on package msdata

General information

Bioconductor link link
Package version0.36.0
Number of strong dependencies0
Number of all dependencies94
Number of parent packages0
Max heaviness from parent packages0
Total heaviness from parent packages0
Number of parent packages (including Suggests and Enhances)3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of msdata and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on msdata.

Adjust heatmap size:
Base packages Other packages Suggests methods stats utils graphics parallel grid stats4 grDevices splines tools Biobase BiocGenerics ProtGenerics Rcpp ncdf4 Rhdf5lib BiocParallel mzR lattice RColorBrewer plyr S4Vectors IRanges MsCoreUtils futile.logger snow codetools BH vsn affy impute pcaMethods MALDIquant mzID digest ggplot2 XML scales MASS Matrix clue lambda.r futile.options limma affyio BiocManager preprocessCore zlibbioc doParallel foreach iterators glue gtable isoband mgcv rlang tibble withr farver labeling lifecycle munsell R6 viridisLite cluster formatR nlme ellipsis fansi magrittr pillar pkgconfig vctrs colorspace cli crayon utf8 MSnbase RANN MassSpecWavelet robustbase SummarizedExperiment MsFeatures DEoptimR MatrixGenerics GenomicRanges GenomeInfoDb DelayedArray matrixStats XVector RCurl GenomeInfoDbData bitops 0 0.5 1 Imported methods 0 20 40 60 80 Required packages 0 20 40 60 80 Heaviness from parents mzR MSnbase xcms In total 0 packages are required directly or indirectly (94) when installing 'msdata' (0.36.0) Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'msdata'


Dependency table

"Import" information is from the NAMESPACE file of msdata.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on msdata: number of required packages that can be reduced if moving parent package to Suggests of msdata.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on msdata
xcms Suggests No object is imported into the namespace of msdata. 93 94
MSnbase Suggests No object is imported into the namespace of msdata. 76 77
mzR Suggests No object is imported into the namespace of msdata. 10 11

Analysis was done with pkgndep.