Dependency analysis on package mzR

General information

Bioconductor link link
Package version2.30.0
Number of strong dependencies10
Number of all dependencies48
Number of parent packages8
Max heaviness from parent packages1
Total heaviness from parent packages5
Number of parent packages (including Suggests and Enhances)15
Max co-heaviness from parent packages ("Biobase" and "BiocGenerics")3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of mzR and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on mzR.

Adjust heatmap size:
Base packages Other packages Depends Imports LinkingTo Suggests methods utils stats graphics tools grDevices parallel BiocGenerics yaml xfun evaluate highr stringr glue magrittr stringi knitr htmltools jquerylib tinytex bslib jsonlite digest base64enc rlang fastmap sass fs R6 rappdirs XML plyr doParallel foreach iterators ProtGenerics Rcpp codetools bookdown rmarkdown BiocManager 0 1 2 Imported methods 0 10 20 30 Required packages 0 10 20 Heaviness from parents methods utils Rcpp ncdf4 ProtGenerics BiocGenerics Biobase Rhdf5lib msdata XML RUnit mzID knitr rmarkdown BiocStyle In total 10 packages are required directly or indirectly (48) when installing 'mzR' (2.30.0) Depends Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'mzR' Imported functions Imported S4 classes The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of mzR.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on mzR: number of required packages that can be reduced if moving parent package to Suggests of mzR.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on mzR
Rcpp Depends The whole set of functions/methods/classes from parent package is imported to the namespace of mzR. 2 1
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of mzR. 0 0
utils Depends 1 0 0 0 0
ncdf4 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of mzR. 0 1
ProtGenerics Imports The whole set of functions/methods/classes from parent package is imported to the namespace of mzR. 1 1
Biobase Imports 1 0 1 5 1
BiocGenerics Imports The whole set of functions/methods/classes from parent package is imported to the namespace of mzR. 4 0
Rhdf5lib LinkingTo Parent package is listed in LinkingTo of mzR but no object from parent package is imported. 0 1
BiocStyle Suggests No object is imported into the namespace of mzR. 30 28
rmarkdown Suggests No object is imported into the namespace of mzR. 27 25
knitr Suggests No object is imported into the namespace of mzR. 12 10
mzID Suggests No object is imported into the namespace of mzR. 11 8
msdata Suggests No object is imported into the namespace of mzR. 0 1
XML Suggests No object is imported into the namespace of mzR. 2 1
RUnit Suggests No object is imported into the namespace of mzR. 3 1

Analysis was done with pkgndep.