Dependency analysis on package NMF

General information

CRAN link link
Package version0.24.0
Number of strong dependencies59
Number of all dependencies124
Number of parent packages21
Max heaviness from parent packages26
Total heaviness from parent packages39
Number of parent packages (including Suggests and Enhances)31
Max co-heaviness from parent packages ("doParallel" and "foreach")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of NMF and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on NMF.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests utils stats methods graphics grDevices tools parallel grid splines compiler glue magrittr stringi digest codetools stringr withr iterators Rcpp foreach rlang tibble lifecycle R6 ellipsis fansi pillar pkgconfig vctrs cli crayon utf8 registry xtable assertthat BiocGenerics plyr gtable isoband MASS mgcv scales nlme Matrix farver labeling munsell RColorBrewer viridisLite lattice colorspace bigmemory.sri uuid BH yaml evaluate highr xfun Rmpi usethis callr desc fs httr memoise pkgbuild pkgload rcmdcheck remotes roxygen2 rstudioapi rversions sessioninfo testthat clipr curl gert gh jsonlite purrr rappdirs rprojroot whisker processx mime openssl cachem prettyunits xopen brew commonmark knitr xml2 cpp11 brio praise ps waldo askpass credentials sys zip gitcreds ini fastmap diffobj rematch2 0 2 4 6 8 Imported methods 0 20 40 60 Required packages 0 20 40 Heaviness from parents methods utils registry cluster rngtools pkgmaker graphics stats grid grDevices RColorBrewer digest BiocManager gridBase foreach colorspace doParallel Biobase stringr reshape2 ggplot2 fastICA mail corpcor xtable RUnit bigmemory synchronicity doMPI knitr devtools In total 59 packages are required directly or indirectly (124) when installing 'NMF' (0.24.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'NMF' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of NMF.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on NMF: number of required packages that can be reduced if moving parent package to Suggests of NMF.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on NMF
pkgmaker Depends The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 16 3
cluster Depends The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 4 1
rngtools Depends The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 5 1
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 0 0
utils Depends 8 0 0 0 0
registry Depends The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 1 0
ggplot2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 37 26
reshape2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 10 3
Biobase Imports Parent package is listed in Imports of NMF but no object from parent package is imported. 5 2
BiocManager Imports Parent package is listed in Imports of NMF but no object from parent package is imported. 1 1
gridBase Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 2 1
doParallel Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 5 1
graphics Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 0 0
stats Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 0 0
grid Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 0 0
grDevices Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 0 0
RColorBrewer Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 0 0
digest Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 1 0
foreach Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 3 0
colorspace Imports 1 0 0 4 0
stringr Imports The whole set of functions/methods/classes from parent package is imported to the namespace of NMF. 7 0
devtools Suggests No object is imported into the namespace of NMF. 76 53
knitr Suggests No object is imported into the namespace of NMF. 12 5
bigmemory Suggests No object is imported into the namespace of NMF. 6 4
synchronicity Suggests No object is imported into the namespace of NMF. 6 4
doMPI Suggests No object is imported into the namespace of NMF. 7 3
fastICA Suggests No object is imported into the namespace of NMF. 0 1
mail Suggests No object is imported into the namespace of NMF. 0 1
corpcor Suggests No object is imported into the namespace of NMF. 1 1
RUnit Suggests No object is imported into the namespace of NMF. 3 1
xtable Suggests No object is imported into the namespace of NMF. 2 0

Analysis was done with pkgndep.