Dependency analysis on package pRolocdata
General information
Bioconductor link link
Package version 1.34.0
Number of strong dependencies 77
Number of all dependencies 227
Number of parent packages 3
Max heaviness from parent packages 71
Total heaviness from parent packages 71
Number of parent packages (including Suggests
and Enhances
) 6
Max co-heaviness from parent packages ("Biobase" and "MSnbase" ) 5
Dependency heatmap
In the following dependency heatmap, rows are the parent packages of pRolocdata and columns are the dependency packages that each parent package brings in.
On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of
dependency packages from each parent package; 3. heaviness of each parent package on pRolocdata .
Adjust heatmap size:
increase
decrease
reset
Base packages
Other packages
Depends
Imports
Suggests
methods
utils
graphics
stats
grDevices
grid
stats4
parallel
splines
tools
datasets
BiocGenerics
Biobase
S4Vectors
IRanges
digest
lattice
zlibbioc
glue
rlang
tibble
withr
lifecycle
R6
Matrix
ellipsis
fansi
magrittr
pillar
pkgconfig
vctrs
cli
crayon
utf8
mzR
ProtGenerics
MsCoreUtils
BiocParallel
plyr
vsn
affy
impute
pcaMethods
MALDIquant
mzID
ggplot2
XML
scales
MASS
Rcpp
ncdf4
Rhdf5lib
clue
futile.logger
snow
codetools
BH
limma
affyio
BiocManager
preprocessCore
doParallel
foreach
iterators
gtable
isoband
mgcv
farver
labeling
munsell
RColorBrewer
viridisLite
cluster
lambda.r
futile.options
nlme
colorspace
formatR
XVector
GenomeInfoDb
RCurl
GenomeInfoDbData
bitops
evaluate
jsonlite
MatrixGenerics
GenomicRanges
DelayedArray
matrixStats
brio
callr
desc
pkgload
praise
processx
ps
waldo
rprojroot
rstudioapi
diffobj
rematch2
MSnbase
MLInterfaces
mclust
caret
e1071
sampling
class
kernlab
nnet
randomForest
proxy
FNN
hexbin
dendextend
knitr
mvtnorm
LaplacesDemon
coda
mixtools
gtools
biomaRt
RcppArmadillo
annotate
gdata
pls
sfsmisc
rpart
genefilter
fpc
ggvis
shiny
gbm
hwriter
threejs
mlbench
ModelMetrics
pROC
recipes
reshape2
lpSolve
viridis
highr
stringr
yaml
xfun
segmented
survival
AnnotationDbi
progress
httr
BiocFileCache
rappdirs
xml2
DBI
xtable
flexmix
prabclus
diptest
robustbase
assertthat
dplyr
htmltools
httpuv
mime
fontawesome
sourcetools
later
promises
fastmap
commonmark
bslib
cachem
igraph
htmlwidgets
base64enc
crosstalk
data.table
generics
gower
hardhat
ipred
lubridate
purrr
tidyr
tidyselect
timeDate
gridExtra
stringi
RSQLite
KEGGREST
hms
prettyunits
curl
openssl
dbplyr
filelock
modeltools
DEoptimR
sass
jquerylib
lazyeval
prodlim
cpp11
bit64
blob
memoise
plogr
png
Biostrings
askpass
fs
KernSmooth
lava
bit
sys
future.apply
progressr
numDeriv
SQUAREM
future
globals
listenv
parallelly
0
1
2
Imported
methods
0
100
200
Required
packages
0
50
100
Heaviness from
parents
MSnbase
utils
Biobase
SummarizedExperiment
testthat
pRoloc
In total 77 packages are required directly or indirectly (227) when installing 'pRolocdata' (1.34.0)
Depends
Imports
Suggests
Base packages that are required
Recommended packages that are required
Contributed packages that are required
Packages that are required for installing 'pRolocdata'
Imported functions
The whole namespace is imported
Dependency table
"Import" information is from the NAMESPACE file of pRolocdata .
imports: number of imported functions/objects; importMethods : number of imported S4 methods; importClasses : number of imported S4 classes.
Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).
Heaviness from parent on pRolocdata : number of required packages that can be reduced if moving parent package to Suggests
of pRolocdata .
Parent package
Field
imports
importMethods
importClasses
Required packages
Heaviness from parent on pRolocdata
MSnbase
Depends
The whole set of functions/methods/classes from parent package is imported to the namespace of pRolocdata .
76
71
utils
Imports
2
0
0
0
0
Biobase
Imports
The whole set of functions/methods/classes from parent package is imported to the namespace of pRolocdata .
5
0
pRoloc
Suggests
No object is imported into the namespace of pRolocdata .
208
132
testthat
Suggests
No object is imported into the namespace of pRolocdata .
36
16
SummarizedExperiment
Suggests
No object is imported into the namespace of pRolocdata .
24
11
Analysis was done with pkgndep .