Dependency analysis on package pRolocdata

General information

Bioconductor link link
Package version1.34.0
Number of strong dependencies77
Number of all dependencies227
Number of parent packages3
Max heaviness from parent packages71
Total heaviness from parent packages71
Number of parent packages (including Suggests and Enhances)6
Max co-heaviness from parent packages ("Biobase" and "MSnbase")5

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of pRolocdata and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on pRolocdata.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils graphics stats grDevices grid stats4 parallel splines tools datasets BiocGenerics Biobase S4Vectors IRanges digest lattice zlibbioc glue rlang tibble withr lifecycle R6 Matrix ellipsis fansi magrittr pillar pkgconfig vctrs cli crayon utf8 mzR ProtGenerics MsCoreUtils BiocParallel plyr vsn affy impute pcaMethods MALDIquant mzID ggplot2 XML scales MASS Rcpp ncdf4 Rhdf5lib clue futile.logger snow codetools BH limma affyio BiocManager preprocessCore doParallel foreach iterators gtable isoband mgcv farver labeling munsell RColorBrewer viridisLite cluster lambda.r futile.options nlme colorspace formatR XVector GenomeInfoDb RCurl GenomeInfoDbData bitops evaluate jsonlite MatrixGenerics GenomicRanges DelayedArray matrixStats brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 MSnbase MLInterfaces mclust caret e1071 sampling class kernlab nnet randomForest proxy FNN hexbin dendextend knitr mvtnorm LaplacesDemon coda mixtools gtools biomaRt RcppArmadillo annotate gdata pls sfsmisc rpart genefilter fpc ggvis shiny gbm hwriter threejs mlbench ModelMetrics pROC recipes reshape2 lpSolve viridis highr stringr yaml xfun segmented survival AnnotationDbi progress httr BiocFileCache rappdirs xml2 DBI xtable flexmix prabclus diptest robustbase assertthat dplyr htmltools httpuv mime fontawesome sourcetools later promises fastmap commonmark bslib cachem igraph htmlwidgets base64enc crosstalk data.table generics gower hardhat ipred lubridate purrr tidyr tidyselect timeDate gridExtra stringi RSQLite KEGGREST hms prettyunits curl openssl dbplyr filelock modeltools DEoptimR sass jquerylib lazyeval prodlim cpp11 bit64 blob memoise plogr png Biostrings askpass fs KernSmooth lava bit sys future.apply progressr numDeriv SQUAREM future globals listenv parallelly 0 1 2 Imported methods 0 100 200 Required packages 0 50 100 Heaviness from parents MSnbase utils Biobase SummarizedExperiment testthat pRoloc In total 77 packages are required directly or indirectly (227) when installing 'pRolocdata' (1.34.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'pRolocdata' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of pRolocdata.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on pRolocdata: number of required packages that can be reduced if moving parent package to Suggests of pRolocdata.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on pRolocdata
MSnbase Depends The whole set of functions/methods/classes from parent package is imported to the namespace of pRolocdata. 76 71
utils Imports 2 0 0 0 0
Biobase Imports The whole set of functions/methods/classes from parent package is imported to the namespace of pRolocdata. 5 0
pRoloc Suggests No object is imported into the namespace of pRolocdata. 208 132
testthat Suggests No object is imported into the namespace of pRolocdata. 36 16
SummarizedExperiment Suggests No object is imported into the namespace of pRolocdata. 24 11

Analysis was done with pkgndep.