Dependency analysis on package SNPlocs.Hsapiens.dbSNP.20101109

General information

Bioconductor link link
Package version0.99.9
Number of strong dependencies16
Number of all dependencies47
Number of parent packages4
Max heaviness from parent packages8
Total heaviness from parent packages8
Number of parent packages (including Suggests and Enhances)7
Max co-heaviness from parent packages ("GenomicRanges" and "IRanges")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of SNPlocs.Hsapiens.dbSNP.20101109 and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on SNPlocs.Hsapiens.dbSNP.20101109.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats stats4 graphics tools grDevices parallel grid BiocGenerics S4Vectors IRanges GenomeInfoDb XVector RCurl GenomeInfoDbData zlibbioc bitops crayon GenomicRanges Biostrings rtracklayer matrixStats Rsamtools XML GenomicAlignments BiocIO restfulr BiocParallel Rhtslib SummarizedExperiment rjson yaml futile.logger snow codetools BH MatrixGenerics Biobase Matrix DelayedArray lambda.r futile.options lattice formatR BSgenome 0 0.5 1 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents IRanges GenomicRanges methods S4Vectors Biostrings BSgenome BSgenome.Hsapiens.UCSC.hg19 In total 16 packages are required directly or indirectly (47) when installing 'SNPlocs.Hsapiens.dbSNP.20101109' (0.99.9) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'SNPlocs.Hsapiens.dbSNP.20101109' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of SNPlocs.Hsapiens.dbSNP.20101109.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on SNPlocs.Hsapiens.dbSNP.20101109: number of required packages that can be reduced if moving parent package to Suggests of SNPlocs.Hsapiens.dbSNP.20101109.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on SNPlocs.Hsapiens.dbSNP.20101109
GenomicRanges Depends The whole set of functions/methods/classes from parent package is imported to the namespace of SNPlocs.Hsapiens.dbSNP.20101109. 15 8
IRanges Depends The whole set of functions/methods/classes from parent package is imported to the namespace of SNPlocs.Hsapiens.dbSNP.20101109. 7 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of SNPlocs.Hsapiens.dbSNP.20101109. 0 0
S4Vectors Imports The whole set of functions/methods/classes from parent package is imported to the namespace of SNPlocs.Hsapiens.dbSNP.20101109. 6 0
BSgenome.Hsapiens.UCSC.hg19 Suggests No object is imported into the namespace of SNPlocs.Hsapiens.dbSNP.20101109. 46 31
BSgenome Suggests No object is imported into the namespace of SNPlocs.Hsapiens.dbSNP.20101109. 45 30
Biostrings Suggests No object is imported into the namespace of SNPlocs.Hsapiens.dbSNP.20101109. 17 3

Analysis was done with pkgndep.