Dependency analysis on package seriation

General information

CRAN link link
Package version1.3.5
Number of strong dependencies16
Number of all dependencies84
Number of parent packages10
Max heaviness from parent packages4
Total heaviness from parent packages10
Number of parent packages (including Suggests and Enhances)19
Max co-heaviness from parent packages ("gclus" and "cluster")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of seriation and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on seriation.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils stats graphics grDevices methods grid splines tools datasets foreach codetools iterators cluster glue Rcpp cli crayon colorspace lifecycle R6 rlang withr viridisLite farver labeling munsell RColorBrewer MASS Matrix lattice digest ellipsis magrittr fansi tibble pillar pkgconfig vctrs utf8 jsonlite rprojroot gtable isoband mgcv scales nlme RcppArmadillo gclus seriation TSP qap registry openssl reticulate RSpectra askpass RcppTOML here png rappdirs RcppEigen sys brio callr desc evaluate pkgload praise processx ps waldo rstudioapi diffobj rematch2 ggplot2 viridis gridExtra 0 2 4 6 8 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents stats grDevices grid qap registry cluster colorspace gclus MASS TSP Rtsne dbscan GA scales DendSer umap testthat ggplot2 dendextend In total 16 packages are required directly or indirectly (84) when installing 'seriation' (1.3.5) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'seriation' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of seriation.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on seriation: number of required packages that can be reduced if moving parent package to Suggests of seriation.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on seriation
TSP Imports The whole set of functions/methods/classes from parent package is imported to the namespace of seriation. 7 4
grid Imports The whole set of functions/methods/classes from parent package is imported to the namespace of seriation. 0 1
qap Imports Parent package is listed in Imports of seriation but no object from parent package is imported. 0 1
registry Imports The whole set of functions/methods/classes from parent package is imported to the namespace of seriation. 1 1
colorspace Imports Parent package is listed in Imports of seriation but no object from parent package is imported. 4 1
gclus Imports Parent package is listed in Imports of seriation but no object from parent package is imported. 5 1
MASS Imports Parent package is listed in Imports of seriation but no object from parent package is imported. 5 1
stats Imports 8 0 0 0 0
grDevices Imports Parent package is listed in Imports of seriation but no object from parent package is imported. 0 0
cluster Imports Parent package is listed in Imports of seriation but no object from parent package is imported. 4 0
dendextend Suggests No object is imported into the namespace of seriation. 41 34
testthat Suggests No object is imported into the namespace of seriation. 36 32
ggplot2 Suggests No object is imported into the namespace of seriation. 37 30
umap Suggests No object is imported into the namespace of seriation. 22 17
scales Suggests No object is imported into the namespace of seriation. 15 10
GA Suggests No object is imported into the namespace of seriation. 13 6
Rtsne Suggests No object is imported into the namespace of seriation. 4 2
dbscan Suggests No object is imported into the namespace of seriation. 5 2
DendSer Suggests No object is imported into the namespace of seriation. 17 2

Analysis was done with pkgndep.