Dependency analysis on package dendextend

General information

CRAN link link
Package version1.15.2
Number of strong dependencies41
Number of all dependencies151
Number of parent packages6
Max heaviness from parent packages2
Total heaviness from parent packages3
Number of parent packages (including Suggests and Enhances)29
Max co-heaviness from parent packages ("viridis" and "ggplot2")35

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of dendextend and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on dendextend.

Adjust heatmap size:
Base packages Other packages Imports Suggests Enhances stats methods grDevices utils graphics grid splines tools parallel stats4 datasets digest glue MASS R6 magrittr colorspace rlang withr lattice crayon tibble nlme lifecycle ellipsis fansi pillar pkgconfig vctrs cli utf8 gtable isoband mgcv scales Matrix farver labeling munsell RColorBrewer viridisLite ggplot2 gridExtra yaml cluster jsonlite evaluate stringr stringi highr xfun TSP qap gclus registry foreach codetools iterators htmltools base64enc fastmap Rcpp seriation httr lazyeval curl mime openssl askpass sys nnet knitr callr processx ps rstudioapi viridis htmlwidgets data.table gtools caTools KernSmooth bitops GlobalOptions shape rex mclust flexmix prabclus class diptest robustbase kernlab modeltools DEoptimR bslib jquerylib tinytex sass fs rappdirs brio desc pkgload praise waldo rprojroot diffobj rematch2 plotly dendextend reshape2 webshot assertthat egg tidyr dplyr crosstalk purrr promises plyr tidyselect cpp11 generics later survival Formula latticeExtra rpart foreign htmlTable png jpeg checkmate backports 0 0.5 1 Imported methods 0 20 40 60 80 Required packages 0 20 40 Heaviness from parents utils stats datasets magrittr ggplot2 viridis pvclust corrplot dynamicTreeCut microbenchmark colorspace cluster MASS gplots circlize ape knitr seriation DendSer covr fpc rmarkdown testthat heatmaply dendroextras data.table rpart ggdendro Hmisc In total 41 packages are required directly or indirectly (151) when installing 'dendextend' (1.15.2) Imports Suggests Enhances Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'dendextend' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of dendextend.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on dendextend: number of required packages that can be reduced if moving parent package to Suggests of dendextend.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on dendextend
viridis Imports 1 0 0 39 2
datasets Imports The whole set of functions/methods/classes from parent package is imported to the namespace of dendextend. 0 1
utils Imports The whole set of functions/methods/classes from parent package is imported to the namespace of dendextend. 0 0
stats Imports The whole set of functions/methods/classes from parent package is imported to the namespace of dendextend. 0 0
magrittr Imports 1 0 0 0 0
ggplot2 Imports The whole set of functions/methods/classes from parent package is imported to the namespace of dendextend. 37 0
heatmaply Suggests No object is imported into the namespace of dendextend. 87 47
rmarkdown Suggests No object is imported into the namespace of dendextend. 27 19
testthat Suggests No object is imported into the namespace of dendextend. 36 16
fpc Suggests No object is imported into the namespace of dendextend. 21 14
covr Suggests No object is imported into the namespace of dendextend. 20 12
DendSer Suggests No object is imported into the namespace of dendextend. 17 10
seriation Suggests No object is imported into the namespace of dendextend. 16 9
knitr Suggests No object is imported into the namespace of dendextend. 12 8
gplots Suggests No object is imported into the namespace of dendextend. 7 5
ape Suggests No object is imported into the namespace of dendextend. 11 4
circlize Suggests No object is imported into the namespace of dendextend. 9 3
pvclust Suggests No object is imported into the namespace of dendextend. 0 1
corrplot Suggests No object is imported into the namespace of dendextend. 0 1
dynamicTreeCut Suggests No object is imported into the namespace of dendextend. 1 1
microbenchmark Suggests No object is imported into the namespace of dendextend. 2 1
cluster Suggests No object is imported into the namespace of dendextend. 4 1
colorspace Suggests No object is imported into the namespace of dendextend. 4 0
MASS Suggests No object is imported into the namespace of dendextend. 5 0
Hmisc Enhances No object is imported into the namespace of dendextend. 67 28
dendroextras Enhances No object is imported into the namespace of dendextend. 0 1
data.table Enhances No object is imported into the namespace of dendextend. 1 1
rpart Enhances No object is imported into the namespace of dendextend. 3 1
ggdendro Enhances No object is imported into the namespace of dendextend. 38 1

The following table lists pairs of parent packages with co-heaviness larger than 10. The co-heaviness measures the number of additional dependencies that two parent packages simultaneously import and are only imported by the two parents.

Note the co-heaviness from parents can be always easily observed in the dependency heatmap.

Parent 1 Parent 2 Co-heaviness on dendextend Co-heaviness as Jaccard coeffcient
ggplot2 viridis 35 0.946

Analysis was done with pkgndep.