Dependency analysis on package siggenes

General information

Bioconductor link link
Package version1.70.0
Number of strong dependencies16
Number of all dependencies62
Number of parent packages9
Max heaviness from parent packages6
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)13
Max co-heaviness from parent packages ("multtest" and "Biobase")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of siggenes and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on siggenes.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests stats utils methods graphics grDevices stats4 splines grid tools BiocGenerics Biobase survival Matrix lattice MASS zlibbioc AnnotationDbi XML DBI xtable httr IRanges RSQLite S4Vectors KEGGREST curl jsonlite mime openssl R6 bit64 blob memoise pkgconfig Rcpp plogr png Biostrings askpass bit rlang vctrs cachem XVector GenomeInfoDb crayon sys cli glue fastmap RCurl GenomeInfoDbData bitops affyio BiocManager preprocessCore annotate 0 10 20 30 Imported methods 0 20 40 Required packages 0 20 40 Heaviness from parents splines methods Biobase multtest stats4 grDevices graphics stats scrime KernSmooth affy annotate genefilter In total 16 packages are required directly or indirectly (62) when installing 'siggenes' (1.70.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'siggenes' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of siggenes.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on siggenes: number of required packages that can be reduced if moving parent package to Suggests of siggenes.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on siggenes
multtest Depends The whole set of functions/methods/classes from parent package is imported to the namespace of siggenes. 14 6
splines Depends The whole set of functions/methods/classes from parent package is imported to the namespace of siggenes. 0 0
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of siggenes. 0 0
Biobase Depends The whole set of functions/methods/classes from parent package is imported to the namespace of siggenes. 5 0
scrime Imports 7 0 0 3 1
stats4 Imports 2 0 0 0 0
grDevices Imports 2 0 0 0 0
graphics Imports 9 0 0 0 0
stats Imports 29 0 0 0 0
genefilter Suggests No object is imported into the namespace of siggenes. 53 41
annotate Suggests No object is imported into the namespace of siggenes. 47 40
affy Suggests No object is imported into the namespace of siggenes. 11 5
KernSmooth Suggests No object is imported into the namespace of siggenes. 1 1

Analysis was done with pkgndep.