Dependency analysis on package snifter

General information

Bioconductor link link
Package version1.6.0
Number of strong dependencies25
Number of all dependencies85
Number of parent packages5
Max heaviness from parent packages5
Total heaviness from parent packages7
Number of parent packages (including Suggests and Enhances)10
Max co-heaviness from parent packages ("basilisk" and "reticulate")9

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of snifter and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on snifter.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils methods stats grDevices tools graphics grid parallel splines jsonlite Matrix lattice rappdirs withr rprojroot Rcpp RcppTOML here png reticulate dir.expiry basilisk.utils filelock glue magrittr evaluate rlang digest R6 highr stringr yaml xfun stringi bslib htmltools jquerylib knitr tinytex sass base64enc fastmap fs tibble lifecycle ellipsis fansi pillar pkgconfig vctrs cli crayon utf8 bookdown rmarkdown BiocManager brio callr desc pkgload praise processx ps waldo rstudioapi diffobj rematch2 gtable isoband MASS mgcv scales nlme farver labeling munsell RColorBrewer viridisLite colorspace 0 2 4 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents stats assertthat irlba reticulate basilisk knitr rmarkdown BiocStyle testthat ggplot2 In total 25 packages are required directly or indirectly (85) when installing 'snifter' (1.6.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'snifter' Imported functions Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of snifter.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on snifter: number of required packages that can be reduced if moving parent package to Suggests of snifter.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on snifter
basilisk Imports 4 0 0 22 5
assertthat Imports 1 0 0 1 1
irlba Imports Parent package is listed in Imports of snifter but no object from parent package is imported. 8 1
stats Imports Parent package is listed in Imports of snifter but no object from parent package is imported. 0 0
reticulate Imports 3 0 0 16 0
ggplot2 Suggests No object is imported into the namespace of snifter. 37 29
testthat Suggests No object is imported into the namespace of snifter. 36 28
BiocStyle Suggests No object is imported into the namespace of snifter. 30 24
rmarkdown Suggests No object is imported into the namespace of snifter. 27 21
knitr Suggests No object is imported into the namespace of snifter. 12 9

Analysis was done with pkgndep.