Dependency analysis on package adegenet

General information

CRAN link link
Package version2.1.7
Number of strong dependencies79
Number of all dependencies144
Number of parent packages16
Max heaviness from parent packages19
Total heaviness from parent packages45
Number of parent packages (including Suggests and Enhances)25
Max co-heaviness from parent packages ("ggplot2" and "dplyr")6

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of adegenet and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on adegenet.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests utils graphics methods stats grDevices grid tools parallel splines lattice magrittr Rcpp MASS glue nlme sp Matrix pkgconfig R6 crayon rlang ellipsis lifecycle tibble fansi pillar vctrs cli utf8 withr digest pixmap mgcv jsonlite plyr stringr stringi ade4 segmented permute cluster generics tidyselect purrr httpuv mime xtable fontawesome htmltools sourcetools later promises fastmap commonmark bslib cachem base64enc sass jquerylib fs rappdirs gtable isoband scales farver labeling munsell RColorBrewer viridisLite colorspace ape boot deldir shiny vegan adegenet igraph ggplot2 seqinr reshape2 dplyr RcppEigen KernSmooth spData sf units s2 e1071 raster classInt DBI wk class proxy terra brio callr desc evaluate pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 pegas polysat progressr gaston gtools RcppParallel adegraphics adephylo spdep latticeExtra phylobase png jpeg rncl RNeXML progress XML httr uuid lazyeval tidyr xml2 hms prettyunits curl openssl cpp11 askpass sys 0 5 10 15 Imported methods 0 50 100 Required packages 0 10 20 30 40 Heaviness from parents methods ade4 utils stats grDevices parallel boot MASS igraph reshape2 ape seqinr vegan dplyr shiny ggplot2 maps splancs interp pegas spdep testthat poppr hierfstat adespatial In total 79 packages are required directly or indirectly (144) when installing 'adegenet' (2.1.7) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'adegenet' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of adegenet.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on adegenet: number of required packages that can be reduced if moving parent package to Suggests of adegenet.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on adegenet
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of adegenet. 0 0
ade4 Depends The whole set of functions/methods/classes from parent package is imported to the namespace of adegenet. 10 0
shiny Imports 2 0 0 34 19
ggplot2 Imports 12 0 0 37 10
reshape2 Imports 1 0 0 10 4
dplyr Imports 1 0 0 20 4
vegan Imports 1 0 0 14 3
seqinr Imports 1 0 0 13 2
boot Imports Parent package is listed in Imports of adegenet but no object from parent package is imported. 2 1
igraph Imports 11 0 0 10 1
ape Imports 15 0 0 11 1
utils Imports The whole set of functions/methods/classes from parent package is imported to the namespace of adegenet. 0 0
stats Imports The whole set of functions/methods/classes from parent package is imported to the namespace of adegenet. 0 0
grDevices Imports The whole set of functions/methods/classes from parent package is imported to the namespace of adegenet. 0 0
parallel Imports The whole set of functions/methods/classes from parent package is imported to the namespace of adegenet. 0 0
MASS Imports 1 0 0 5 0
adespatial Suggests No object is imported into the namespace of adegenet. 117 39
spdep Suggests No object is imported into the namespace of adegenet. 27 15
testthat Suggests No object is imported into the namespace of adegenet. 36 14
hierfstat Suggests No object is imported into the namespace of adegenet. 84 6
poppr Suggests No object is imported into the namespace of adegenet. 83 5
interp Suggests No object is imported into the namespace of adegenet. 11 3
maps Suggests No object is imported into the namespace of adegenet. 2 1
splancs Suggests No object is imported into the namespace of adegenet. 8 1
pegas Suggests No object is imported into the namespace of adegenet. 12 1

Analysis was done with pkgndep.