Dependency analysis on package adespatial

General information

CRAN link link
Package version0.3-16
Number of strong dependencies117
Number of all dependencies127
Number of parent packages14
Max heaviness from parent packages48
Total heaviness from parent packages66
Number of parent packages (including Suggests and Enhances)19
Max co-heaviness from parent packages ("adephylo" and "shiny")27

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of adespatial and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on adespatial.

Adjust heatmap size:
Base packages Other packages Imports Suggests stats utils grDevices methods graphics grid tools splines parallel lattice sp MASS magrittr Rcpp glue pixmap nlme rlang jsonlite htmltools R6 fastmap bslib digest base64enc sass jquerylib fs rappdirs stringr stringi Matrix mgcv permute cluster ade4 KernSmooth RColorBrewer boot httpuv mime xtable fontawesome sourcetools later promises crayon withr commonmark cachem ellipsis lifecycle latticeExtra png jpeg spData sf deldir units s2 e1071 raster classInt DBI wk class proxy terra phylobase ape adegenet rncl RNeXML igraph shiny ggplot2 seqinr reshape2 dplyr vegan progress XML plyr httr uuid lazyeval tidyr xml2 pkgconfig gtable isoband scales tibble segmented generics tidyselect vctrs pillar hms prettyunits curl openssl purrr cpp11 farver labeling munsell viridisLite fansi cli utf8 askpass colorspace sys evaluate highr yaml xfun foreign knitr tinytex 0 10 20 Imported methods 0 50 100 Required packages 0 20 40 Heaviness from parents methods grDevices graphics stats utils lattice MASS sp ade4 vegan adegraphics spdep shiny adephylo rgeos maptools ape knitr rmarkdown In total 117 packages are required directly or indirectly (127) when installing 'adespatial' (0.3-16) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'adespatial' Imported functions Imported S4 methods Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of adespatial.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on adespatial: number of required packages that can be reduced if moving parent package to Suggests of adespatial.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on adespatial
adephylo Imports 1 0 0 97 48
spdep Imports 18 0 0 27 14
adegraphics Imports 9 2 0 16 4
methods Imports 2 0 0 0 0
grDevices Imports 5 0 0 0 0
graphics Imports 8 0 0 0 0
stats Imports 26 0 0 0 0
utils Imports 3 0 0 0 0
lattice Imports 1 0 0 5 0
MASS Imports 1 0 0 5 0
sp Imports 4 1 9 7 0
ade4 Imports 14 0 0 10 0
vegan Imports 5 0 0 14 0
shiny Imports 1 0 0 34 0
rmarkdown Suggests No object is imported into the namespace of adespatial. 27 7
knitr Suggests No object is imported into the namespace of adespatial. 12 5
maptools Suggests No object is imported into the namespace of adespatial. 9 2
rgeos Suggests No object is imported into the namespace of adespatial. 8 1
ape Suggests No object is imported into the namespace of adespatial. 11 0

The following table lists pairs of parent packages with co-heaviness larger than 10. The co-heaviness measures the number of additional dependencies that two parent packages simultaneously import and are only imported by the two parents.

Note the co-heaviness from parents can be always easily observed in the dependency heatmap.

Parent 1 Parent 2 Co-heaviness on adespatial Co-heaviness as Jaccard coeffcient
shiny adephylo 27 0.36

Analysis was done with pkgndep.