Dependency analysis on package adephylo

General information

CRAN link link
Package version1.1-11
Number of strong dependencies97
Number of all dependencies97
Number of parent packages5
Max heaviness from parent packages40
Total heaviness from parent packages57
Number of parent packages (including Suggests and Enhances)5
Max co-heaviness from parent packages ("adegenet" and "phylobase")24

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of adephylo and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on adephylo.

Adjust heatmap size:
Base packages Other packages Depends Imports graphics grDevices methods stats utils grid tools parallel splines lattice MASS pixmap sp Rcpp nlme ade4 ape plyr reshape2 dplyr stringr stringi rlang R6 crayon jsonlite mime generics glue lifecycle magrittr tibble tidyselect vctrs pillar ellipsis purrr pkgconfig fansi cli utf8 rncl RNeXML progress XML httr uuid lazyeval tidyr xml2 hms prettyunits curl openssl cpp11 askpass sys igraph shiny ggplot2 seqinr boot vegan Matrix httpuv xtable fontawesome htmltools sourcetools later promises fastmap withr commonmark bslib cachem digest gtable isoband mgcv scales segmented permute cluster base64enc sass jquerylib farver labeling munsell RColorBrewer viridisLite fs rappdirs colorspace 0 1 2 3 Imported methods 0 20 40 60 80 Required packages 0 10 20 30 40 Heaviness from parents methods ade4 ape phylobase adegenet In total 97 packages are required directly or indirectly (97) when installing 'adephylo' (1.1-11) Depends Imports Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'adephylo' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of adephylo.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on adephylo: number of required packages that can be reduced if moving parent package to Suggests of adephylo.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on adephylo
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of adephylo. 0 0
ade4 Depends The whole set of functions/methods/classes from parent package is imported to the namespace of adephylo. 10 0
adegenet Imports 3 0 0 79 40
phylobase Imports The whole set of functions/methods/classes from parent package is imported to the namespace of adephylo. 56 17
ape Imports 2 0 0 11 0

The following table lists pairs of parent packages with co-heaviness larger than 10. The co-heaviness measures the number of additional dependencies that two parent packages simultaneously import and are only imported by the two parents.

Note the co-heaviness from parents can be always easily observed in the dependency heatmap.

Parent 1 Parent 2 Co-heaviness on adephylo Co-heaviness as Jaccard coeffcient
phylobase adegenet 24 0.296

Analysis was done with pkgndep.