Dependency analysis on package phylobase

General information

CRAN link link
Package version0.8.10
Number of strong dependencies56
Number of all dependencies76
Number of parent packages8
Max heaviness from parent packages27
Total heaviness from parent packages35
Number of parent packages (including Suggests and Enhances)11
Max co-heaviness from parent packages ("RNeXML" and "rncl")9

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of phylobase and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on phylobase.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats grDevices graphics tools grid parallel glue lattice Rcpp R6 crayon ellipsis lifecycle pkgconfig rlang vctrs cli magrittr nlme stringr stringi jsonlite tibble pillar fansi utf8 MASS pixmap sp progress hms prettyunits ape XML plyr reshape2 httr uuid dplyr lazyeval tidyr xml2 curl mime openssl generics tidyselect purrr cpp11 askpass sys evaluate highr yaml xfun brio callr desc digest pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj rematch2 0 2 4 Imported methods 0 20 40 Required packages 0 10 20 Heaviness from parents grid methods stats Rcpp ade4 ape rncl RNeXML MASS knitr testthat In total 56 packages are required directly or indirectly (76) when installing 'phylobase' (0.8.10) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'phylobase' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of phylobase.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on phylobase: number of required packages that can be reduced if moving parent package to Suggests of phylobase.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on phylobase
RNeXML Imports The whole set of functions/methods/classes from parent package is imported to the namespace of phylobase. 47 27
ade4 Imports 1 0 0 10 4
rncl Imports 1 0 0 17 4
grid Imports The whole set of functions/methods/classes from parent package is imported to the namespace of phylobase. 0 0
methods Imports 4 0 0 0 0
stats Imports The whole set of functions/methods/classes from parent package is imported to the namespace of phylobase. 0 0
Rcpp Imports 1 0 0 2 0
ape Imports The whole set of functions/methods/classes from parent package is imported to the namespace of phylobase. 11 0
testthat Suggests No object is imported into the namespace of phylobase. 36 16
knitr Suggests No object is imported into the namespace of phylobase. 12 5
MASS Suggests No object is imported into the namespace of phylobase. 5 0

Analysis was done with pkgndep.