Dependency analysis on package bamsignals

General information

Bioconductor link link
Package version1.28.0
Number of strong dependencies18
Number of all dependencies80
Number of parent packages7
Max heaviness from parent packages7
Total heaviness from parent packages9
Number of parent packages (including Suggests and Enhances)12
Max co-heaviness from parent packages ("GenomicRanges" and "IRanges")3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of bamsignals and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on bamsignals.

Adjust heatmap size:
Base packages Other packages Imports LinkingTo Suggests methods utils stats tools graphics stats4 grDevices parallel BiocGenerics S4Vectors zlibbioc IRanges GenomeInfoDb XVector RCurl GenomeInfoDbData bitops evaluate magrittr glue yaml xfun highr stringr stringi digest jsonlite R6 rlang knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs crayon GenomicRanges Biostrings BiocParallel Rhtslib futile.logger snow codetools BH lambda.r futile.options formatR bookdown rmarkdown BiocManager brio callr cli desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 0.5 1 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods zlibbioc Rcpp BiocGenerics IRanges GenomicRanges Rhtslib knitr rmarkdown Rsamtools BiocStyle testthat In total 18 packages are required directly or indirectly (80) when installing 'bamsignals' (1.28.0) Imports LinkingTo Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'bamsignals' The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of bamsignals.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on bamsignals: number of required packages that can be reduced if moving parent package to Suggests of bamsignals.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on bamsignals
GenomicRanges Imports The whole set of functions/methods/classes from parent package is imported to the namespace of bamsignals. 15 7
Rcpp Imports The whole set of functions/methods/classes from parent package is imported to the namespace of bamsignals. 2 1
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of bamsignals. 0 0
zlibbioc Imports The whole set of functions/methods/classes from parent package is imported to the namespace of bamsignals. 0 0
BiocGenerics Imports The whole set of functions/methods/classes from parent package is imported to the namespace of bamsignals. 4 0
IRanges Imports The whole set of functions/methods/classes from parent package is imported to the namespace of bamsignals. 7 0
Rhtslib LinkingTo Parent package is listed in LinkingTo of bamsignals but no object from parent package is imported. 1 1
testthat Suggests No object is imported into the namespace of bamsignals. 36 32
BiocStyle Suggests No object is imported into the namespace of bamsignals. 30 27
rmarkdown Suggests No object is imported into the namespace of bamsignals. 27 24
Rsamtools Suggests No object is imported into the namespace of bamsignals. 29 13
knitr Suggests No object is imported into the namespace of bamsignals. 12 9

Analysis was done with pkgndep.