Dependency analysis on package gcrma

General information

Bioconductor link link
Package version2.68.0
Number of strong dependencies24
Number of all dependencies53
Number of parent packages11
Max heaviness from parent packages6
Total heaviness from parent packages9
Number of parent packages (including Suggests and Enhances)15
Max co-heaviness from parent packages ("Biostrings" and "XVector")5

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of gcrma and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on gcrma.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils graphics stats grDevices tools stats4 BiocGenerics zlibbioc Biobase S4Vectors IRanges XVector GenomeInfoDb crayon RCurl GenomeInfoDbData bitops affyio BiocManager preprocessCore AnnotationDbi DBI RSQLite KEGGREST bit64 blob memoise pkgconfig Rcpp plogr httr png Biostrings bit rlang vctrs cachem curl jsonlite mime openssl R6 cli glue fastmap askpass sys affy 0 5 10 Imported methods 0 20 40 Required packages 0 10 20 Heaviness from parents graphics methods stats utils affy splines BiocManager affyio Biobase XVector Biostrings tools affydata hgu95av2cdf hgu95av2probe In total 24 packages are required directly or indirectly (53) when installing 'gcrma' (2.68.0) Depends Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'gcrma' Imported functions Imported S4 methods Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of gcrma.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on gcrma: number of required packages that can be reduced if moving parent package to Suggests of gcrma.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on gcrma
affy Depends 6 8 0 11 2
graphics Depends 1 0 0 0 0
methods Depends 1 0 0 0 0
stats Depends 7 0 0 0 0
utils Depends 4 0 0 0 0
Biostrings Imports 2 2 1 17 6
splines Imports 1 0 0 0 1
BiocManager Imports 1 0 0 1 0
affyio Imports 1 0 0 2 0
Biobase Imports 1 4 0 5 0
XVector Imports 2 0 0 10 0
hgu95av2cdf Suggests No object is imported into the namespace of gcrma. 45 27
hgu95av2probe Suggests No object is imported into the namespace of gcrma. 45 27
affydata Suggests No object is imported into the namespace of gcrma. 12 1
tools Suggests No object is imported into the namespace of gcrma. 0 0

Analysis was done with pkgndep.