Dependency analysis on package geiger

General information

CRAN link link
Package version2.0.10
Number of strong dependencies36
Number of all dependencies38
Number of parent packages12
Max heaviness from parent packages16
Total heaviness from parent packages22
Number of parent packages (including Suggests and Enhances)13
Max co-heaviness from parent packages ("phytools" and "ape")4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of geiger and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on geiger.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods stats graphics utils grDevices grid tools parallel lattice nlme Rcpp ape maps clusterGeneration coda combinat expm MASS mnormt numDeriv phangorn plotrix scatterplot3d Matrix fastmatch igraph quadprog magrittr pkgconfig geiger mvtnorm subplex deSolve digest ncbit colorspace phytools 0 2 4 Imported methods 0 10 20 30 Required packages 0 5 10 15 Heaviness from parents ape subplex ncbit methods digest mvtnorm Rcpp deSolve colorspace MASS coda phytools TreeSim In total 36 packages are required directly or indirectly (38) when installing 'geiger' (2.0.10) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'geiger' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of geiger.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on geiger: number of required packages that can be reduced if moving parent package to Suggests of geiger.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on geiger
ape Depends The whole set of functions/methods/classes from parent package is imported to the namespace of geiger. 11 0
phytools Imports 4 0 0 29 16
subplex Imports The whole set of functions/methods/classes from parent package is imported to the namespace of geiger. 0 1
ncbit Imports Parent package is listed in Imports of geiger but no object from parent package is imported. 0 1
digest Imports The whole set of functions/methods/classes from parent package is imported to the namespace of geiger. 1 1
mvtnorm Imports The whole set of functions/methods/classes from parent package is imported to the namespace of geiger. 2 1
deSolve Imports The whole set of functions/methods/classes from parent package is imported to the namespace of geiger. 4 1
colorspace Imports Parent package is listed in Imports of geiger but no object from parent package is imported. 4 1
methods Imports 2 0 0 0 0
Rcpp Imports The whole set of functions/methods/classes from parent package is imported to the namespace of geiger. 2 0
MASS Imports The whole set of functions/methods/classes from parent package is imported to the namespace of geiger. 5 0
coda Imports The whole set of functions/methods/classes from parent package is imported to the namespace of geiger. 6 0
TreeSim Suggests No object is imported into the namespace of geiger. 37 2

Analysis was done with pkgndep.