Dependency analysis on package phytools

General information

CRAN link link
Package version1.0-3
Number of strong dependencies29
Number of all dependencies57
Number of parent packages18
Max heaviness from parent packages6
Total heaviness from parent packages15
Number of parent packages (including Suggests and Enhances)22
Max co-heaviness from parent packages ("phangorn" and "ape")4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of phytools and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on phytools.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests graphics utils stats grDevices methods grid tools parallel lattice Rcpp magrittr nlme Matrix MASS ape fastmatch igraph quadprog pkgconfig digest magick curl htmlwidgets htmltools knitr jsonlite R6 yaml base64enc rlang fastmap evaluate highr stringr xfun glue stringi mvtnorm subplex deSolve coda ncbit colorspace phytools maps clusterGeneration combinat expm mnormt numDeriv phangorn plotrix scatterplot3d 0 20 40 Imported methods 0 10 20 30 Required packages 0 5 10 15 Heaviness from parents maps ape combinat graphics grDevices methods mnormt numDeriv stats utils scatterplot3d plotrix MASS clusterGeneration coda nlme expm phangorn RColorBrewer animation rgl geiger In total 29 packages are required directly or indirectly (57) when installing 'phytools' (1.0-3) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'phytools' Imported functions


Dependency table

"Import" information is from the NAMESPACE file of phytools.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on phytools: number of required packages that can be reduced if moving parent package to Suggests of phytools.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on phytools
maps Depends 1 0 0 2 1
ape Depends 45 0 0 11 0
phangorn Imports 20 0 0 18 6
combinat Imports 1 0 0 0 1
mnormt Imports 2 0 0 0 1
numDeriv Imports 1 0 0 0 1
scatterplot3d Imports 1 0 0 3 1
plotrix Imports 5 0 0 4 1
clusterGeneration Imports 1 0 0 6 1
coda Imports 2 0 0 6 1
expm Imports 1 0 0 8 1
graphics Imports 28 0 0 0 0
grDevices Imports 15 0 0 0 0
methods Imports 1 0 0 0 0
stats Imports 40 0 0 0 0
utils Imports 6 0 0 0 0
MASS Imports 1 0 0 5 0
nlme Imports 2 0 0 6 0
rgl Suggests No object is imported into the namespace of phytools. 23 17
geiger Suggests No object is imported into the namespace of phytools. 36 8
animation Suggests No object is imported into the namespace of phytools. 6 3
RColorBrewer Suggests No object is imported into the namespace of phytools. 0 1

Analysis was done with pkgndep.