Dependency analysis on package phangorn

General information

CRAN link link
Package version2.8.1
Number of strong dependencies18
Number of all dependencies66
Number of parent packages12
Max heaviness from parent packages3
Total heaviness from parent packages8
Number of parent packages (including Suggests and Enhances)22
Max co-heaviness from parent packages ("parallel" and "ape")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of phangorn and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on phangorn.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests utils methods stats grDevices graphics tools grid parallel stats4 magrittr lattice nlme Rcpp Matrix pkgconfig evaluate highr stringr yaml xfun glue stringi htmltools jsonlite knitr rlang digest base64enc fastmap R6 bslib jquerylib tinytex sass fs rappdirs curl ade4 segmented MASS pixmap sp BiocGenerics S4Vectors IRanges XVector GenomeInfoDb crayon zlibbioc RCurl GenomeInfoDbData bitops htmlwidgets rmarkdown 0 10 20 Imported methods 0 10 20 Required packages 0 10 20 Heaviness from parents ape fastmatch graphics grDevices methods parallel quadprog stats utils Rcpp Matrix igraph tinytest xtable seqLogo magick knitr seqinr Biostrings rgl rmarkdown prettydoc In total 18 packages are required directly or indirectly (66) when installing 'phangorn' (2.8.1) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'phangorn' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of phangorn.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on phangorn: number of required packages that can be reduced if moving parent package to Suggests of phangorn.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on phangorn
ape Depends The whole set of functions/methods/classes from parent package is imported to the namespace of phangorn. 11 3
igraph Imports 7 0 0 10 3
fastmatch Imports 1 0 0 0 1
quadprog Imports 2 0 0 0 1
graphics Imports 21 0 0 0 0
grDevices Imports 4 0 0 0 0
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of phangorn. 0 0
parallel Imports The whole set of functions/methods/classes from parent package is imported to the namespace of phangorn. 0 0
stats Imports 27 0 0 0 0
utils Imports 7 0 0 0 0
Rcpp Imports The whole set of functions/methods/classes from parent package is imported to the namespace of phangorn. 2 0
Matrix Imports 5 0 0 7 0
prettydoc Suggests No object is imported into the namespace of phangorn. 28 23
rmarkdown Suggests No object is imported into the namespace of phangorn. 27 22
rgl Suggests No object is imported into the namespace of phangorn. 23 17
Biostrings Suggests No object is imported into the namespace of phangorn. 17 12
knitr Suggests No object is imported into the namespace of phangorn. 12 8
seqinr Suggests No object is imported into the namespace of phangorn. 13 6
seqLogo Suggests No object is imported into the namespace of phangorn. 4 2
magick Suggests No object is imported into the namespace of phangorn. 5 2
tinytest Suggests No object is imported into the namespace of phangorn. 2 1
xtable Suggests No object is imported into the namespace of phangorn. 2 1

Analysis was done with pkgndep.