Dependency analysis on package MotifDb

General information

Bioconductor link link
Package version1.38.0
Number of strong dependencies47
Number of all dependencies76
Number of parent packages8
Max heaviness from parent packages26
Total heaviness from parent packages28
Number of parent packages (including Suggests and Enhances)15
Max co-heaviness from parent packages ("rtracklayer" and "Biostrings")3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of MotifDb and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on MotifDb.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats graphics tools stats4 grDevices grid parallel BiocGenerics S4Vectors yaml IRanges GenomeInfoDb XVector RCurl GenomeInfoDbData zlibbioc bitops crayon data.table GenomicRanges XML Biostrings Rsamtools GenomicAlignments BiocIO restfulr BiocParallel Rhtslib SummarizedExperiment rjson futile.logger snow codetools BH MatrixGenerics Biobase Matrix DelayedArray lambda.r futile.options matrixStats lattice formatR xfun evaluate highr stringr glue magrittr stringi knitr htmltools jquerylib tinytex bslib jsonlite digest base64enc rlang fastmap sass fs R6 rappdirs mime bookdown rmarkdown BiocManager 0 0.5 1 Imported methods 0 20 40 Required packages 0 10 20 Heaviness from parents methods BiocGenerics S4Vectors IRanges GenomicRanges Biostrings splitstackshape rtracklayer formatR RUnit seqLogo markdown knitr rmarkdown BiocStyle In total 47 packages are required directly or indirectly (76) when installing 'MotifDb' (1.38.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'MotifDb' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of MotifDb.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on MotifDb: number of required packages that can be reduced if moving parent package to Suggests of MotifDb.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on MotifDb
methods Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MotifDb. 0 0
BiocGenerics Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MotifDb. 4 0
S4Vectors Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MotifDb. 6 0
IRanges Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MotifDb. 7 0
GenomicRanges Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MotifDb. 15 0
Biostrings Depends The whole set of functions/methods/classes from parent package is imported to the namespace of MotifDb. 17 0
rtracklayer Imports 1 0 0 44 26
splitstackshape Imports 1 0 0 2 2
BiocStyle Suggests No object is imported into the namespace of MotifDb. 30 25
rmarkdown Suggests No object is imported into the namespace of MotifDb. 27 22
knitr Suggests No object is imported into the namespace of MotifDb. 12 8
markdown Suggests No object is imported into the namespace of MotifDb. 5 3
RUnit Suggests No object is imported into the namespace of MotifDb. 3 1
seqLogo Suggests No object is imported into the namespace of MotifDb. 4 1
formatR Suggests No object is imported into the namespace of MotifDb. 0 0

Analysis was done with pkgndep.