Dependency analysis on package MsBackendMgf

General information

Bioconductor link link
Package version1.4.0
Number of strong dependencies27
Number of all dependencies82
Number of parent packages7
Max heaviness from parent packages4
Total heaviness from parent packages4
Number of parent packages (including Suggests and Enhances)12
Max co-heaviness from parent packages ("BiocParallel" and "Spectra")9

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of MsBackendMgf and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on MsBackendMgf.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods stats utils graphics grDevices tools stats4 parallel BiocGenerics S4Vectors fs futile.logger snow codetools BH MASS clue Rcpp lambda.r futile.options cluster formatR BiocParallel ProtGenerics IRanges MsCoreUtils evaluate magrittr glue highr stringr yaml xfun stringi digest R6 rlang jsonlite knitr htmltools jquerylib tinytex bslib base64enc fastmap sass rappdirs cli crayon desc pkgload withr rprojroot rstudioapi brew commonmark purrr xml2 cpp11 bookdown rmarkdown BiocManager brio callr ellipsis lifecycle praise processx ps waldo diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 5 10 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents Spectra methods stats S4Vectors IRanges BiocParallel MsCoreUtils knitr rmarkdown roxygen2 BiocStyle testthat In total 27 packages are required directly or indirectly (82) when installing 'MsBackendMgf' (1.4.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'MsBackendMgf' Imported functions Imported S4 methods Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of MsBackendMgf.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on MsBackendMgf: number of required packages that can be reduced if moving parent package to Suggests of MsBackendMgf.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on MsBackendMgf
Spectra Depends 1 10 1 26 4
methods Imports 3 0 0 0 0
stats Imports 1 0 0 0 0
S4Vectors Imports 1 0 0 6 0
IRanges Imports 1 0 0 7 0
BiocParallel Imports 1 1 0 11 0
MsCoreUtils Imports 1 0 0 12 0
testthat Suggests No object is imported into the namespace of MsBackendMgf. 36 31
roxygen2 Suggests No object is imported into the namespace of MsBackendMgf. 30 25
BiocStyle Suggests No object is imported into the namespace of MsBackendMgf. 30 25
rmarkdown Suggests No object is imported into the namespace of MsBackendMgf. 27 22
knitr Suggests No object is imported into the namespace of MsBackendMgf. 12 9

Analysis was done with pkgndep.