Dependency analysis on package MsFeatures

General information

Bioconductor link link
Package version1.4.0
Number of strong dependencies31
Number of all dependencies96
Number of parent packages5
Max heaviness from parent packages17
Total heaviness from parent packages23
Number of parent packages (including Suggests and Enhances)11
Max co-heaviness from parent packages ("SummarizedExperiment" and "MsCoreUtils")6

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of MsFeatures and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on MsFeatures.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods stats utils grDevices tools graphics stats4 grid S4Vectors BiocGenerics MASS clue Rcpp cluster MatrixGenerics GenomicRanges Biobase Matrix IRanges GenomeInfoDb DelayedArray matrixStats XVector lattice RCurl GenomeInfoDbData zlibbioc bitops glue evaluate magrittr R6 rlang stringi stringr highr yaml xfun digest jsonlite knitr lifecycle htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs cli crayon desc pkgload withr rprojroot rstudioapi RColorBrewer scales gtable farver labeling munsell viridisLite colorspace brew commonmark purrr xml2 cpp11 bookdown rmarkdown BiocManager brio callr ellipsis praise processx ps waldo diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 2 4 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods stats ProtGenerics MsCoreUtils SummarizedExperiment knitr pheatmap rmarkdown roxygen2 BiocStyle testthat In total 31 packages are required directly or indirectly (96) when installing 'MsFeatures' (1.4.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'MsFeatures' Imported functions Imported S4 methods Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of MsFeatures.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on MsFeatures: number of required packages that can be reduced if moving parent package to Suggests of MsFeatures.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on MsFeatures
SummarizedExperiment Imports 0 3 1 24 17
MsCoreUtils Imports 1 0 0 12 5
ProtGenerics Imports 0 0 1 1 1
methods Imports 1 0 0 0 0
stats Imports 2 0 0 0 0
testthat Suggests No object is imported into the namespace of MsFeatures. 36 31
BiocStyle Suggests No object is imported into the namespace of MsFeatures. 30 26
roxygen2 Suggests No object is imported into the namespace of MsFeatures. 30 25
rmarkdown Suggests No object is imported into the namespace of MsFeatures. 27 23
pheatmap Suggests No object is imported into the namespace of MsFeatures. 18 13
knitr Suggests No object is imported into the namespace of MsFeatures. 12 9

Analysis was done with pkgndep.