Dependency analysis on package parathyroidSE

General information

Bioconductor link link
Package version1.34.0
Number of strong dependencies25
Number of all dependencies126
Number of parent packages1
Max heaviness from parent packages25
Total heaviness from parent packages25
Number of parent packages (including Suggests and Enhances)7

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of parathyroidSE and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on parathyroidSE.

Adjust heatmap size:
Base packages Other packages Depends Suggests methods utils stats tools grDevices graphics stats4 grid parallel BiocGenerics Biobase RCurl bitops GenomicRanges S4Vectors IRanges GenomeInfoDb XVector GenomeInfoDbData zlibbioc MatrixGenerics Matrix DelayedArray matrixStats lattice crayon magrittr R6 rlang glue Biostrings BiocParallel Rhtslib futile.logger snow codetools BH lambda.r futile.options formatR fastmap xml2 dplyr curl cli hms lifecycle tibble generics tidyselect vctrs pillar ellipsis purrr pkgconfig fansi bit64 withr progress utf8 bit prettyunits stringr digest rappdirs yaml stringi jsonlite SummarizedExperiment Rsamtools readr data.table tidyr limma R.utils clipr vroom cpp11 tzdb R.oo R.methodsS3 RSQLite blob DBI memoise Rcpp plogr cachem bookdown knitr rmarkdown BiocManager htmltools jquerylib xfun tinytex evaluate highr bslib base64enc sass fs graph GEOquery AnnotationDbi BiocIO rtracklayer biomaRt KEGGREST XML GenomicAlignments restfulr httr BiocFileCache png rjson mime openssl dbplyr filelock askpass assertthat sys 0 0.5 1 Imported methods 0 50 100 Required packages 0 20 40 60 Heaviness from parents SummarizedExperiment Rsamtools BiocStyle GenomicAlignments GEOquery SRAdb GenomicFeatures In total 25 packages are required directly or indirectly (126) when installing 'parathyroidSE' (1.34.0) Depends Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'parathyroidSE' Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of parathyroidSE.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on parathyroidSE: number of required packages that can be reduced if moving parent package to Suggests of parathyroidSE.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on parathyroidSE
SummarizedExperiment Depends Parent package is listed in Depends of parathyroidSE but no object from parent package is imported. 24 25
GenomicFeatures Suggests No object is imported into the namespace of parathyroidSE. 96 72
SRAdb Suggests No object is imported into the namespace of parathyroidSE. 58 48
GEOquery Suggests No object is imported into the namespace of parathyroidSE. 45 38
BiocStyle Suggests No object is imported into the namespace of parathyroidSE. 30 26
GenomicAlignments Suggests No object is imported into the namespace of parathyroidSE. 38 14
Rsamtools Suggests No object is imported into the namespace of parathyroidSE. 29 13

Analysis was done with pkgndep.