Dependency analysis on package rBiopaxParser

General information

Bioconductor link link
Package version2.36.0
Number of strong dependencies4
Number of all dependencies22
Number of parent packages2
Max heaviness from parent packages2
Total heaviness from parent packages3
Number of parent packages (including Suggests and Enhances)9
Max co-heaviness from parent packages ("XML" and "data.table")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of rBiopaxParser and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on rBiopaxParser.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils graphics stats stats4 grid grDevices BiocGenerics graph bitops BH magrittr Matrix pkgconfig lattice 0 0.5 1 Imported methods 0 5 10 Required packages 0 2 4 6 8 Heaviness from parents data.table XML RCurl RUnit BiocGenerics graph RBGL Rgraphviz igraph In total 4 packages are required directly or indirectly (22) when installing 'rBiopaxParser' (2.36.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'rBiopaxParser' The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of rBiopaxParser.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on rBiopaxParser: number of required packages that can be reduced if moving parent package to Suggests of rBiopaxParser.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on rBiopaxParser
data.table Depends The whole set of functions/methods/classes from parent package is imported to the namespace of rBiopaxParser. 1 1
XML Imports Parent package is listed in Imports of rBiopaxParser but no object from parent package is imported. 2 2
igraph Suggests No object is imported into the namespace of rBiopaxParser. 10 9
Rgraphviz Suggests No object is imported into the namespace of rBiopaxParser. 9 8
RBGL Suggests No object is imported into the namespace of rBiopaxParser. 8 7
graph Suggests No object is imported into the namespace of rBiopaxParser. 6 5
BiocGenerics Suggests No object is imported into the namespace of rBiopaxParser. 4 3
RCurl Suggests No object is imported into the namespace of rBiopaxParser. 2 2
RUnit Suggests No object is imported into the namespace of rBiopaxParser. 3 2

Analysis was done with pkgndep.