Dependency analysis on package SPIA

General information

Bioconductor link link
Package version2.48.0
Number of strong dependencies14
Number of all dependencies52
Number of parent packages2
Max heaviness from parent packages13
Total heaviness from parent packages13
Number of parent packages (including Suggests and Enhances)5
Max co-heaviness from parent packages ("KEGGgraph" and "graphics")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of SPIA and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on SPIA.

Adjust heatmap size:
Base packages Other packages Depends Suggests methods utils stats stats4 graphics grDevices grid tools BiocGenerics graph RCurl bitops XML Rgraphviz AnnotationDbi org.Hs.eg.db Biobase IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise pkgconfig Rcpp plogr httr png Biostrings bit rlang vctrs cachem curl jsonlite mime openssl R6 XVector GenomeInfoDb crayon cli glue fastmap askpass zlibbioc GenomeInfoDbData sys 0 2 4 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents graphics KEGGgraph graph Rgraphviz hgu133plus2.db In total 14 packages are required directly or indirectly (52) when installing 'SPIA' (2.48.0) Depends Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'SPIA' Imported functions Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of SPIA.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on SPIA: number of required packages that can be reduced if moving parent package to Suggests of SPIA.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on SPIA
KEGGgraph Depends Parent package is listed in Depends of SPIA but no object from parent package is imported. 13 13
graphics Depends 4 0 0 0 0
hgu133plus2.db Suggests No object is imported into the namespace of SPIA. 46 38
graph Suggests No object is imported into the namespace of SPIA. 6 0
Rgraphviz Suggests No object is imported into the namespace of SPIA. 9 0

Analysis was done with pkgndep.