Dependency analysis on package KEGGgraph

General information

Bioconductor link link
Package version1.56.0
Number of strong dependencies13
Number of all dependencies79
Number of parent packages6
Max heaviness from parent packages3
Total heaviness from parent packages6
Number of parent packages (including Suggests and Enhances)12
Max co-heaviness from parent packages ("Rgraphviz" and "graph")5

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of KEGGgraph and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on KEGGgraph.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats graphics stats4 grDevices grid tools BiocGenerics bitops graph RCurl cli crayon jsonlite R6 rlang glue pkgconfig vctrs AnnotationDbi Biobase IRanges DBI RSQLite S4Vectors KEGGREST bit64 blob memoise Rcpp plogr httr png Biostrings bit cachem curl mime openssl XVector GenomeInfoDb fastmap askpass zlibbioc GenomeInfoDbData sys BH KEGGgraph XML Rgraphviz brio callr desc digest ellipsis evaluate lifecycle magrittr pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar utf8 org.Hs.eg.db 0 5 10 15 20 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents methods utils XML RCurl graph Rgraphviz RColorBrewer RBGL SPIA testthat org.Hs.eg.db hgu133plus2.db In total 13 packages are required directly or indirectly (79) when installing 'KEGGgraph' (1.56.0) Imports Suggests Base packages that are required Contributed packages that are required Packages that are required for installing 'KEGGgraph' Imported functions Imported S4 methods Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of KEGGgraph.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on KEGGgraph: number of required packages that can be reduced if moving parent package to Suggests of KEGGgraph.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on KEGGgraph
Rgraphviz Imports 2 0 0 9 3
RCurl Imports 1 0 0 2 2
XML Imports 6 0 0 2 1
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of KEGGgraph. 0 0
utils Imports 2 0 0 0 0
graph Imports 18 1 1 6 0
hgu133plus2.db Suggests No object is imported into the namespace of KEGGgraph. 46 38
org.Hs.eg.db Suggests No object is imported into the namespace of KEGGgraph. 45 37
testthat Suggests No object is imported into the namespace of KEGGgraph. 36 32
RBGL Suggests No object is imported into the namespace of KEGGgraph. 8 2
SPIA Suggests No object is imported into the namespace of KEGGgraph. 14 2
RColorBrewer Suggests No object is imported into the namespace of KEGGgraph. 0 1

Analysis was done with pkgndep.