Dependency analysis on package ScaledMatrix

General information

Bioconductor link link
Package version1.4.0
Number of strong dependencies15
Number of all dependencies81
Number of parent packages4
Max heaviness from parent packages4
Total heaviness from parent packages4
Number of parent packages (including Suggests and Enhances)9
Max co-heaviness from parent packages ("DelayedArray" and "Matrix")4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of ScaledMatrix and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on ScaledMatrix.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods stats utils grDevices graphics stats4 grid tools parallel BiocGenerics lattice Matrix MatrixGenerics S4Vectors IRanges matrixStats evaluate magrittr glue yaml xfun highr stringr stringi digest jsonlite R6 rlang knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs DelayedArray BiocParallel ScaledMatrix irlba rsvd Rcpp beachmat futile.logger snow codetools BH lambda.r futile.options formatR bookdown rmarkdown BiocManager brio callr cli crayon desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 2 4 6 8 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods S4Vectors Matrix DelayedArray knitr rmarkdown BiocSingular BiocStyle testthat In total 15 packages are required directly or indirectly (81) when installing 'ScaledMatrix' (1.4.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'ScaledMatrix' Imported functions Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of ScaledMatrix.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on ScaledMatrix: number of required packages that can be reduced if moving parent package to Suggests of ScaledMatrix.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on ScaledMatrix
DelayedArray Imports 5 0 1 14 4
methods Imports 3 0 0 0 0
S4Vectors Imports 1 0 0 6 0
Matrix Imports 8 0 0 7 0
testthat Suggests No object is imported into the namespace of ScaledMatrix. 36 32
BiocStyle Suggests No object is imported into the namespace of ScaledMatrix. 30 27
rmarkdown Suggests No object is imported into the namespace of ScaledMatrix. 27 24
BiocSingular Suggests No object is imported into the namespace of ScaledMatrix. 29 15
knitr Suggests No object is imported into the namespace of ScaledMatrix. 12 10

Analysis was done with pkgndep.