Dependency analysis on package BiocSingular

General information

Bioconductor link link
Package version1.12.0
Number of strong dependencies29
Number of all dependencies81
Number of parent packages12
Max heaviness from parent packages9
Total heaviness from parent packages13
Number of parent packages (including Suggests and Enhances)17
Max co-heaviness from parent packages ("beachmat" and "Rcpp")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of BiocSingular and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on BiocSingular.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats graphics grDevices grid stats4 parallel tools lattice Matrix BiocGenerics MatrixGenerics S4Vectors IRanges matrixStats DelayedArray futile.logger snow codetools BH lambda.r futile.options formatR Rcpp evaluate magrittr glue yaml xfun highr stringr stringi digest jsonlite R6 rlang knitr htmltools jquerylib tinytex bslib base64enc fastmap sass fs rappdirs bookdown rmarkdown BiocManager brio callr cli crayon desc ellipsis lifecycle pkgload praise processx ps waldo withr rprojroot rstudioapi diffobj fansi rematch2 tibble pillar pkgconfig vctrs utf8 0 5 10 Imported methods 0 10 20 30 Required packages 0 10 20 30 Heaviness from parents methods utils Rcpp BiocGenerics S4Vectors Matrix irlba rsvd BiocParallel DelayedArray ScaledMatrix beachmat knitr ResidualMatrix rmarkdown BiocStyle testthat In total 29 packages are required directly or indirectly (81) when installing 'BiocSingular' (1.12.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'BiocSingular' Imported functions Imported S4 classes


Dependency table

"Import" information is from the NAMESPACE file of BiocSingular.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on BiocSingular: number of required packages that can be reduced if moving parent package to Suggests of BiocSingular.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on BiocSingular
BiocParallel Imports 5 0 1 11 9
irlba Imports 1 0 0 8 1
rsvd Imports 1 0 0 8 1
ScaledMatrix Imports 2 0 0 15 1
beachmat Imports 1 0 0 16 1
methods Imports 4 0 0 0 0
utils Imports 1 0 0 0 0
Rcpp Imports 1 0 0 2 0
BiocGenerics Imports 2 0 0 4 0
S4Vectors Imports 1 0 0 6 0
Matrix Imports 4 0 1 7 0
DelayedArray Imports 10 0 1 14 0
testthat Suggests No object is imported into the namespace of BiocSingular. 36 32
BiocStyle Suggests No object is imported into the namespace of BiocSingular. 30 27
rmarkdown Suggests No object is imported into the namespace of BiocSingular. 27 24
knitr Suggests No object is imported into the namespace of BiocSingular. 12 10
ResidualMatrix Suggests No object is imported into the namespace of BiocSingular. 15 1

Analysis was done with pkgndep.