Dependency analysis on package tidyHeatmap

General information

CRAN link link
Package version1.8.1
Number of strong dependencies68
Number of all dependencies120
Number of parent packages18
Max heaviness from parent packages16
Total heaviness from parent packages21
Number of parent packages (including Suggests and Enhances)29
Max co-heaviness from parent packages ("ComplexHeatmap" and "circlize")3

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of tidyHeatmap and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on tidyHeatmap.

Adjust heatmap size:
Base packages Other packages Imports Suggests utils methods grDevices stats graphics grid splines stats4 parallel datasets tools magrittr glue rlang crayon cli R6 digest lifecycle vctrs pillar ellipsis fansi pkgconfig utf8 tibble withr colorspace RColorBrewer viridisLite gtable isoband MASS mgcv scales nlme Matrix farver labeling munsell lattice purrr cpp11 ggplot2 GlobalOptions shape generics tidyselect gridExtra dplyr circlize GetoptLong clue png IRanges matrixStats foreach doParallel codetools rjson cluster BiocGenerics S4Vectors iterators viridis evaluate yaml highr stringr xfun stringi jsonlite xml2 knitr desc pkgload rprojroot rstudioapi Rcpp askpass curl sys commonmark htmltools base64enc fastmap brio callr praise processx ps waldo diffobj rematch2 hunspell rex httr lazyeval mime openssl bslib jquerylib tinytex sass fs rappdirs brew testthat 0 5 10 Imported methods 0 20 40 Required packages 0 10 20 Heaviness from parents methods stats utils magrittr RColorBrewer grid grDevices rlang purrr lifecycle circlize tibble dplyr tidyr ComplexHeatmap patchwork viridis dendextend BiocManager qpdf knitr forcats spelling covr rmarkdown roxygen2 testthat ggplot2 vdiffr In total 68 packages are required directly or indirectly (120) when installing 'tidyHeatmap' (1.8.1) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'tidyHeatmap' Imported functions The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of tidyHeatmap.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on tidyHeatmap: number of required packages that can be reduced if moving parent package to Suggests of tidyHeatmap.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on tidyHeatmap
ComplexHeatmap Imports 8 0 0 28 16
tidyr Imports The whole set of functions/methods/classes from parent package is imported to the namespace of tidyHeatmap. 22 2
dendextend Imports 1 0 0 41 2
patchwork Imports 1 0 0 38 1
methods Imports 2 0 0 0 0
stats Imports 6 0 0 0 0
utils Imports 4 0 0 0 0
magrittr Imports 4 0 0 0 0
RColorBrewer Imports 1 0 0 0 0
grid Imports 5 0 0 0 0
grDevices Imports 1 0 0 0 0
rlang Imports 8 0 0 1 0
purrr Imports 10 0 0 3 0
lifecycle Imports 2 0 0 4 0
circlize Imports 1 0 0 9 0
tibble Imports 2 0 0 15 0
dplyr Imports The whole set of functions/methods/classes from parent package is imported to the namespace of tidyHeatmap. 20 0
viridis Imports 2 0 0 39 0
vdiffr Suggests No object is imported into the namespace of tidyHeatmap. 42 21
rmarkdown Suggests No object is imported into the namespace of tidyHeatmap. 27 19
roxygen2 Suggests No object is imported into the namespace of tidyHeatmap. 30 16
testthat Suggests No object is imported into the namespace of tidyHeatmap. 36 16
spelling Suggests No object is imported into the namespace of tidyHeatmap. 18 13
covr Suggests No object is imported into the namespace of tidyHeatmap. 20 12
knitr Suggests No object is imported into the namespace of tidyHeatmap. 12 8
qpdf Suggests No object is imported into the namespace of tidyHeatmap. 6 5
BiocManager Suggests No object is imported into the namespace of tidyHeatmap. 1 1
forcats Suggests No object is imported into the namespace of tidyHeatmap. 16 1
ggplot2 Suggests No object is imported into the namespace of tidyHeatmap. 37 0

Analysis was done with pkgndep.