Dependency analysis on package XtraSNPlocs.Hsapiens.dbSNP144.GRCh38

General information

Bioconductor link link
Package version0.99.12
Number of strong dependencies46
Number of all dependencies48
Number of parent packages8
Max heaviness from parent packages30
Total heaviness from parent packages30
Number of parent packages (including Suggests and Enhances)11
Max co-heaviness from parent packages ("GenomicRanges" and "BSgenome")4

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests methods utils stats graphics stats4 tools grDevices parallel grid BiocGenerics S4Vectors IRanges RCurl GenomeInfoDbData bitops GenomeInfoDb XVector zlibbioc crayon GenomicRanges Biostrings rtracklayer matrixStats Rsamtools XML GenomicAlignments BiocIO restfulr BiocParallel Rhtslib SummarizedExperiment rjson yaml futile.logger snow codetools BH MatrixGenerics Biobase Matrix DelayedArray lambda.r futile.options lattice formatR BSgenome 0 0.5 1 Imported methods 0 20 40 Required packages 0 10 20 30 Heaviness from parents BSgenome methods utils BiocGenerics S4Vectors IRanges GenomeInfoDb GenomicRanges Biostrings BSgenome.Hsapiens.UCSC.hg38 SNPlocs.Hsapiens.dbSNP144.GRCh38 In total 46 packages are required directly or indirectly (48) when installing 'XtraSNPlocs.Hsapiens.dbSNP144.GRCh38' (0.99.12) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'XtraSNPlocs.Hsapiens.dbSNP144.GRCh38' The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on XtraSNPlocs.Hsapiens.dbSNP144.GRCh38: number of required packages that can be reduced if moving parent package to Suggests of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
BSgenome Depends The whole set of functions/methods/classes from parent package is imported to the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 45 30
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 0 0
utils Imports The whole set of functions/methods/classes from parent package is imported to the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 0 0
BiocGenerics Imports The whole set of functions/methods/classes from parent package is imported to the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 4 0
S4Vectors Imports The whole set of functions/methods/classes from parent package is imported to the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 6 0
IRanges Imports The whole set of functions/methods/classes from parent package is imported to the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 7 0
GenomeInfoDb Imports The whole set of functions/methods/classes from parent package is imported to the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 11 0
GenomicRanges Imports The whole set of functions/methods/classes from parent package is imported to the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 15 0
BSgenome.Hsapiens.UCSC.hg38 Suggests No object is imported into the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 46 1
SNPlocs.Hsapiens.dbSNP144.GRCh38 Suggests No object is imported into the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 46 1
Biostrings Suggests No object is imported into the namespace of XtraSNPlocs.Hsapiens.dbSNP144.GRCh38. 17 0

Analysis was done with pkgndep.