Dependency analysis on package DHARMa

General information

CRAN link link
Package version0.4.5
Number of strong dependencies107
Number of all dependencies176
Number of parent packages11
Max heaviness from parent packages29
Total heaviness from parent packages69
Number of parent packages (including Suggests and Enhances)26
Max co-heaviness from parent packages ("gap" and "lme4")8

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of DHARMa and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on DHARMa.

Adjust heatmap size:
Base packages Other packages Imports Suggests Enhances stats utils grDevices methods graphics grid tools parallel splines stats4 lattice nlme glue magrittr R6 rlang digest Rcpp lifecycle withr jsonlite ellipsis crayon Matrix tibble vctrs pillar MASS fansi pkgconfig cli utf8 evaluate callr desc processx ps rprojroot RcppEigen brio pkgload praise waldo rstudioapi diffobj rematch2 boot minqa nloptr testthat mgcv base64enc htmltools fastmap gtable RColorBrewer promises mime later bslib sass jquerylib fs rappdirs dplyr ggplot2 generics tidyselect isoband scales viridisLite tidyr purrr farver labeling munsell yaml cpp11 colorspace shiny plyr doParallel httpuv xtable fontawesome sourcetools commonmark cachem foreach iterators codetools zoo gap.datasets plotly httr htmlwidgets lazyeval crosstalk data.table curl openssl askpass sys lme4 matrixStats stringr stringi gridExtra highr xfun numDeriv qgam prettyunits coda ape mvtnorm knitr tinytex TMB proxy pbapply gmp ROI geometry registry slam magic lpSolve linprog RcppProgress abind gamm4 viridis GGally KernSmooth miniUI forcats progress reshape hms StanHeaders inline RcppParallel loo pkgbuild BH checkmate backports latticeExtra RcppArmadillo png jpeg emulator tmvtnorm IDPmisc ellipse msm DHARMa gap bridgesampling gmm survival expm lmtest Brobdingnag sandwich 0 1 2 Imported methods 0 50 100 Required packages 0 10 20 30 Heaviness from parents stats graphics utils grDevices parallel Matrix lmtest ape qgam lme4 gap KernSmooth sfsmisc MASS mgcv GLMMadaptive knitr rmarkdown testthat glmmTMB spaMM mgcViz rjags rstan phyr BayesianTools In total 107 packages are required directly or indirectly (176) when installing 'DHARMa' (0.4.5) Imports Suggests Enhances Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'DHARMa' Imported functions The whole namespace is imported Package is listed in 'Imports' but namespace is not imported


Dependency table

"Import" information is from the NAMESPACE file of DHARMa.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on DHARMa: number of required packages that can be reduced if moving parent package to Suggests of DHARMa.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on DHARMa
gap Imports Parent package is listed in Imports of DHARMa but no object from parent package is imported. 65 29
lme4 Imports 2 0 0 49 19
qgam Imports Parent package is listed in Imports of DHARMa but no object from parent package is imported. 47 18
lmtest Imports Parent package is listed in Imports of DHARMa but no object from parent package is imported. 7 2
ape Imports Parent package is listed in Imports of DHARMa but no object from parent package is imported. 11 1
stats Imports The whole set of functions/methods/classes from parent package is imported to the namespace of DHARMa. 0 0
graphics Imports The whole set of functions/methods/classes from parent package is imported to the namespace of DHARMa. 0 0
utils Imports The whole set of functions/methods/classes from parent package is imported to the namespace of DHARMa. 0 0
grDevices Imports The whole set of functions/methods/classes from parent package is imported to the namespace of DHARMa. 0 0
parallel Imports Parent package is listed in Imports of DHARMa but no object from parent package is imported. 0 0
Matrix Imports Parent package is listed in Imports of DHARMa but no object from parent package is imported. 7 0
spaMM Suggests No object is imported into the namespace of DHARMa. 60 13
mgcViz Suggests No object is imported into the namespace of DHARMa. 103 13
rmarkdown Suggests No object is imported into the namespace of DHARMa. 27 7
knitr Suggests No object is imported into the namespace of DHARMa. 12 5
glmmTMB Suggests No object is imported into the namespace of DHARMa. 52 3
GLMMadaptive Suggests No object is imported into the namespace of DHARMa. 11 2
KernSmooth Suggests No object is imported into the namespace of DHARMa. 1 1
sfsmisc Suggests No object is imported into the namespace of DHARMa. 4 1
MASS Suggests No object is imported into the namespace of DHARMa. 5 0
mgcv Suggests No object is imported into the namespace of DHARMa. 10 0
testthat Suggests No object is imported into the namespace of DHARMa. 36 0
BayesianTools Enhances No object is imported into the namespace of DHARMa. 125 19
rstan Enhances No object is imported into the namespace of DHARMa. 58 13
phyr Enhances No object is imported into the namespace of DHARMa. 65 7
rjags Enhances No object is imported into the namespace of DHARMa. 7 2

Analysis was done with pkgndep.