Dependency analysis on package flowClust

General information

Bioconductor link link
Package version3.34.0
Number of strong dependencies20
Number of all dependencies151
Number of parent packages6
Max heaviness from parent packages11
Total heaviness from parent packages13
Number of parent packages (including Suggests and Enhances)13
Max co-heaviness from parent packages ("flowCore" and "Biobase")1

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of flowClust and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on flowClust.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods utils stats graphics grDevices stats4 tools grid splines tcltk parallel BiocGenerics Biobase Rcpp matrixStats cytolib S4Vectors RcppArmadillo BH RProtoBufLib RcppParallel Rhdf5lib magrittr glue digest jsonlite R6 rlang base64enc cli crayon ellipsis lifecycle withr fansi tibble pillar pkgconfig vctrs utf8 evaluate lattice latticeExtra XML ggplot2 graph RBGL Rgraphviz data.table dplyr scales aws.s3 aws.signature flowCore ncdfFlow DelayedArray png jpeg RColorBrewer gtable isoband MASS mgcv generics tidyselect farver labeling munsell viridisLite curl httr xml2 zlibbioc Matrix MatrixGenerics IRanges nlme purrr colorspace mime openssl askpass sys highr stringr yaml xfun stringi flowViz flowWorkspace ks rrcov KernSmooth hexbin IDPmisc fda cluster corpcor mnormt FNN kernlab mclust multicool mvtnorm plot3D pracma robustbase pcaPP fds deSolve misc3d DEoptimR rainbow RCurl hdrcde bitops locfit ash bslib htmltools jquerylib knitr tinytex sass fastmap fs rappdirs brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 gtools flowStats flowClust clue plyr R.utils R.oo R.methodsS3 0 0.5 1 Imported methods 0 50 100 Required packages 0 50 100 Heaviness from parents methods parallel BiocGenerics Biobase graph flowCore flowWorkspaceData knitr rmarkdown testthat flowWorkspace flowStats openCyto In total 20 packages are required directly or indirectly (151) when installing 'flowClust' (3.34.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'flowClust' Imported functions Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of flowClust.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on flowClust: number of required packages that can be reduced if moving parent package to Suggests of flowClust.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on flowClust
flowCore Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowClust. 17 11
parallel Imports 1 0 0 0 1
graph Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowClust. 6 1
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowClust. 0 0
BiocGenerics Imports 1 0 0 4 0
Biobase Imports 0 0 1 5 0
openCyto Suggests No object is imported into the namespace of flowClust. 120 101
flowStats Suggests No object is imported into the namespace of flowClust. 111 93
flowWorkspace Suggests No object is imported into the namespace of flowClust. 80 62
testthat Suggests No object is imported into the namespace of flowClust. 36 32
rmarkdown Suggests No object is imported into the namespace of flowClust. 27 24
knitr Suggests No object is imported into the namespace of flowClust. 12 10
flowWorkspaceData Suggests No object is imported into the namespace of flowClust. 0 1

Analysis was done with pkgndep.