Dependency analysis on package flowDensity

General information

Bioconductor link link
Package version1.30.0
Number of strong dependencies146
Number of all dependencies155
Number of parent packages12
Max heaviness from parent packages42
Total heaviness from parent packages84
Number of parent packages (including Suggests and Enhances)14
Max co-heaviness from parent packages ("car" and "flowWorkspace")6

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of flowDensity and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on flowDensity.

Adjust heatmap size:
Base packages Other packages Imports Suggests methods stats utils grDevices graphics grid tools stats4 splines parallel lattice magrittr glue Rcpp BH MASS RColorBrewer rlang R6 digest sp Biobase BiocGenerics matrixStats cytolib S4Vectors RcppArmadillo RProtoBufLib RcppParallel Rhdf5lib mgcv nlme Matrix ellipsis tibble ggplot2 lifecycle vctrs pillar fansi pkgconfig gtable isoband scales withr cli crayon utf8 farver labeling munsell viridisLite colorspace jsonlite stringr evaluate highr yaml xfun stringi KernSmooth flowCore latticeExtra png jpeg dplyr generics purrr tidyselect base64enc knitr gtools caTools bitops hexbin IDPmisc RPMG GEOmap RSEIS splancs fields MBA Rwave spam viridis maps dotCall64 gridExtra XML graph RBGL Rgraphviz data.table aws.s3 aws.signature ncdfFlow DelayedArray curl httr xml2 zlibbioc MatrixGenerics IRanges mime openssl askpass sys carData abind nnet pbkrtest quantreg maptools lme4 broom numDeriv SparseM MatrixModels survival foreign boot minqa nloptr RcppEigen backports tidyr testthat cpp11 brio callr desc pkgload praise processx ps waldo rprojroot rstudioapi diffobj rematch2 bslib htmltools jquerylib tinytex sass fastmap fs rappdirs 0 2 4 6 Imported methods 0 20 40 60 80 Required packages 0 20 40 Heaviness from parents graphics methods stats grDevices sp gplots rgeos flowCore flowViz RFOC flowWorkspace car knitr rmarkdown In total 146 packages are required directly or indirectly (155) when installing 'flowDensity' (1.30.0) Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'flowDensity' Imported functions Imported S4 classes The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of flowDensity.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on flowDensity: number of required packages that can be reduced if moving parent package to Suggests of flowDensity.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on flowDensity
car Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowDensity. 87 42
flowWorkspace Imports 1 0 1 80 21
RFOC Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowDensity. 52 13
gplots Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowDensity. 7 4
flowViz Imports 1 0 0 28 3
rgeos Imports 3 0 0 8 1
graphics Imports 7 0 0 0 0
methods Imports 1 0 0 0 0
stats Imports 6 0 0 0 0
grDevices Imports 5 0 0 0 0
sp Imports 4 0 0 7 0
flowCore Imports The whole set of functions/methods/classes from parent package is imported to the namespace of flowDensity. 17 0
rmarkdown Suggests No object is imported into the namespace of flowDensity. 27 9
knitr Suggests No object is imported into the namespace of flowDensity. 12 0

Analysis was done with pkgndep.