Dependency analysis on package GOstats

General information

Bioconductor link link
Package version2.62.0
Number of strong dependencies62
Number of all dependencies71
Number of parent packages12
Max heaviness from parent packages7
Total heaviness from parent packages10
Number of parent packages (including Suggests and Enhances)24
Max co-heaviness from parent packages ("RBGL" and "Category")2

Dependency heatmap

In the following dependency heatmap, rows are the parent packages of GOstats and columns are the dependency packages that each parent package brings in. On the right side of the heatmap, there are three barplot annotations: 1. number of imported functions/S4 methods/S4 classes from parent packages; 2. number of dependency packages from each parent package; 3. heaviness of each parent package on GOstats.

Adjust heatmap size:
Base packages Other packages Depends Imports Suggests utils methods graphics stats stats4 grDevices tools grid splines BiocGenerics Biobase DBI IRanges RSQLite S4Vectors KEGGREST httr bit64 blob memoise pkgconfig Rcpp plogr png Biostrings curl jsonlite mime openssl R6 bit rlang vctrs cachem XVector GenomeInfoDb crayon askpass cli glue fastmap zlibbioc RCurl GenomeInfoDbData sys bitops AnnotationDbi XML xtable graph annotate lattice Matrix survival BH RBGL GSEABase genefilter MASS org.Hs.eg.db RColorBrewer 0 2 4 6 Imported methods 0 20 40 60 Required packages 0 2 4 6 Heaviness from parents Biobase graph Category methods stats stats4 RBGL Rgraphviz AnnotationDbi GO.db AnnotationForge annotate RColorBrewer xtable RUnit SparseM BiocGenerics ALL multtest org.Hs.eg.db hgu95av2.db GSEABase geneplotter genefilter In total 62 packages are required directly or indirectly (71) when installing 'GOstats' (2.62.0) Depends Imports Suggests Base packages that are required Recommended packages that are required Contributed packages that are required Packages that are required for installing 'GOstats' Imported functions Imported S4 methods The whole namespace is imported


Dependency table

"Import" information is from the NAMESPACE file of GOstats.

imports: number of imported functions/objects; importMethods: number of imported S4 methods; importClasses: number of imported S4 classes.

Required packages: number of strong dependency packages for each of the parent package (or in other words, number of dependency packages the parent package brings in).

Heaviness from parent on GOstats: number of required packages that can be reduced if moving parent package to Suggests of GOstats.

Parent package Field imports importMethods importClasses Required packages Heaviness from parent on GOstats
Category Depends The whole set of functions/methods/classes from parent package is imported to the namespace of GOstats. 58 7
Biobase Depends 2 3 0 5 0
graph Depends The whole set of functions/methods/classes from parent package is imported to the namespace of GOstats. 6 0
Rgraphviz Imports 1 1 0 9 1
GO.db Imports 1 0 0 45 1
AnnotationForge Imports 1 0 0 46 1
methods Imports The whole set of functions/methods/classes from parent package is imported to the namespace of GOstats. 0 0
stats Imports 2 0 0 0 0
stats4 Imports 1 0 0 0 0
RBGL Imports 3 0 0 8 0
AnnotationDbi Imports 1 6 0 44 0
annotate Imports 3 0 0 47 0
multtest Suggests No object is imported into the namespace of GOstats. 14 2
hgu95av2.db Suggests No object is imported into the namespace of GOstats. 46 2
geneplotter Suggests No object is imported into the namespace of GOstats. 51 2
RColorBrewer Suggests No object is imported into the namespace of GOstats. 0 1
RUnit Suggests No object is imported into the namespace of GOstats. 3 1
SparseM Suggests No object is imported into the namespace of GOstats. 4 1
ALL Suggests No object is imported into the namespace of GOstats. 6 1
org.Hs.eg.db Suggests No object is imported into the namespace of GOstats. 45 1
xtable Suggests No object is imported into the namespace of GOstats. 2 0
BiocGenerics Suggests No object is imported into the namespace of GOstats. 4 0
GSEABase Suggests No object is imported into the namespace of GOstats. 49 0
genefilter Suggests No object is imported into the namespace of GOstats. 53 0

Analysis was done with pkgndep.